From 29732b6afe05b4df0ab0edcc8db2300b870346bc Mon Sep 17 00:00:00 2001 From: Helena Rasche Date: Tue, 25 Jun 2024 10:55:16 +0200 Subject: [PATCH] fix non-semantic list --- topics/fair/tutorials/fair-ena/tutorial.md | 34 +++++++++++----------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/topics/fair/tutorials/fair-ena/tutorial.md b/topics/fair/tutorials/fair-ena/tutorial.md index 42a79123e5caf7..45fce92ebfe5a4 100644 --- a/topics/fair/tutorials/fair-ena/tutorial.md +++ b/topics/fair/tutorials/fair-ena/tutorial.md @@ -232,24 +232,24 @@ First, we need to confirm that your read files are in the correct format. Refer > Linux or OSX > #### On a Linux-based operating system -> **Step 1**: -> Compress the fastq files for the upload using gzip. +> 1. Compress the fastq files for the upload using gzip. > -> Open the terminal on your machine then type the commands below. First move to the directory where fastq files are located, then compress the fastq files using gzip command. -> ``` -> # In the command below replace '/path/to/fastq/directory' with the correct path -> cd /path/to/fastq/directory -> -> gzip *.fastq -> ``` -> **Step 2**: -> To enable verification of the integrity of the uploaded fastq file, ENA requires md5 checksum for each file. -> -> Type the command below to calculate and print md5 sums to tab-separated file (for easy cut-and-paste later). -> ``` -> for f in *.gz; do md5 $f | awk '{ gsub(/\(|\)/,""); print $2"\t" $4 }'; done > md5sums.tsv -> ``` -> md5sums.tsv will contain a tab-separated table of fastq.gz filenames and their md5sum. +> Open the terminal on your machine then type the commands below. First move to the directory where fastq files are located, then compress the fastq files using gzip command. +> +> ``` +> # In the command below replace '/path/to/fastq/directory' with the correct path +> cd /path/to/fastq/directory +> +> gzip *.fastq +> ``` +> +> 2. To enable verification of the integrity of the uploaded fastq file, ENA requires md5 checksum for each file. +> +> Type the command below to calculate and print md5 sums to tab-separated file (for easy cut-and-paste later). +> ``` +> for f in *.gz; do md5 $f | awk '{ gsub(/\(|\)/,""); print $2"\t" $4 }'; done > md5sums.tsv +> ``` +> md5sums.tsv will contain a tab-separated table of fastq.gz filenames and their md5sum. > {: .hands_on}