Add new training for scATAC-seq analysis using SnapATAC2 #157
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "[Cron] Add missing data-library.yaml files" | ||
| on: | ||
| workflow_dispatch: | ||
| schedule: | ||
| - cron: '45 0 * * 3' | ||
| jobs: | ||
| runner-job: | ||
| runs-on: ubuntu-latest | ||
| # Only run on main repo on and PRs that match the main repo. | ||
| if: | | ||
| github.repository == 'galaxyproject/training-material' && | ||
| (github.event_name != 'pull_request' || | ||
| github.event.pull_request.head.repo.full_name == github.repository) | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 1 | ||
| # BEGIN Dependencies | ||
| - uses: ruby/setup-ruby@v1 | ||
| with: | ||
| ruby-version: "3.0" | ||
| - uses: actions/cache@v2 | ||
| with: | ||
| path: | | ||
| vendor/bundle | ||
| key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-gems- | ||
| - name: Install dependencies | ||
| run: | | ||
| gem install bundler | ||
| bundle config path vendor/bundle | ||
| bundle install --jobs 4 --retry 3 | ||
| bundle pristine ffi | ||
| # END Dependencies | ||
| - name: Update data libraries | ||
| id: generate | ||
| run: | | ||
| grep zenodo_link: -R topics -l | grep '.md$' | xargs -r -n 1 bundle exec ruby bin/update-data-library update --fragile | ||
| - name: Create Pull Request | ||
| # If it's not a Pull Request then commit any changes as a new PR. | ||
| if: | | ||
| github.event_name != 'pull_request' | ||
| uses: peter-evans/create-pull-request@v3 | ||
| with: | ||
| title: Add missing data-library.yaml files | ||
| branch-suffix: timestamp | ||
| commit-message: Adds data-library.yaml for tutorials | ||
| add-paths: **/data-library.yaml | ||
