From 732f021a6c88e73ab6d7ce04a04b625f2a83df03 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Wed, 13 Dec 2023 12:09:08 +1100 Subject: [PATCH 1/4] funannotate_annotate RAM --- tools.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools.yml b/tools.yml index bd6fcb9..fb506b7 100644 --- a/tools.yml +++ b/tools.yml @@ -1190,7 +1190,7 @@ tools: mem: 40 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_clean/funannotate_clean/.*: cores: 8 - mem: 40 + mem: 64 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/.*: cores: 12 mem: 12 From 49db3dc1d0423d4c84ef4a3234412092a2d661c4 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Mon, 18 Dec 2023 12:47:58 +1100 Subject: [PATCH 2/4] check fa input size --- tools.yml | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/tools.yml b/tools.yml index fb506b7..c4970c5 100644 --- a/tools.yml +++ b/tools.yml @@ -1188,9 +1188,13 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/funannotate_annotate/funannotate_annotate/.*: cores: 8 mem: 40 + rules: + - id: funannotate_annotate_large_input + if: input_size > 3250 + mem: 64 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_clean/funannotate_clean/.*: cores: 8 - mem: 64 + mem: 40 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/.*: cores: 12 mem: 12 From 10ecfc64cbb1457d5f725ad158b278061704987f Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Mon, 18 Dec 2023 14:29:03 +1100 Subject: [PATCH 3/4] make that 62 --- tools.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools.yml b/tools.yml index c4970c5..9a687cb 100644 --- a/tools.yml +++ b/tools.yml @@ -1191,7 +1191,7 @@ tools: rules: - id: funannotate_annotate_large_input if: input_size > 3250 - mem: 64 + mem: 62 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_clean/funannotate_clean/.*: cores: 8 mem: 40 From e6fd5b7311f41dfa8f0d9263d7a64774bbf1e1c9 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Mon, 18 Dec 2023 14:29:59 +1100 Subject: [PATCH 4/4] gb --- tools.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools.yml b/tools.yml index 9a687cb..285d43f 100644 --- a/tools.yml +++ b/tools.yml @@ -1190,7 +1190,7 @@ tools: mem: 40 rules: - id: funannotate_annotate_large_input - if: input_size > 3250 + if: input_size > 3.2 mem: 62 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_clean/funannotate_clean/.*: cores: 8