From 583548ea40e0f811de8dd7334164a1c54610a80f Mon Sep 17 00:00:00 2001
From: gxydevbot <72021197+gxydevbot@users.noreply.github.com>
Date: Sun, 19 May 2024 12:02:01 -0400
Subject: [PATCH] Updating tools/drep from version 3.4.5 to 3.5.0 (#5806)
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* Updating tools/drep from version 3.4.5 to 3.5.0

* fix lint

* Update drep_compare.xml

* Update drep_dereplicate.xml

---------

Co-authored-by: planemo-autoupdate <planemo-autoupdate@users.noreply.github.com>
Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
---
 tools/drep/drep_compare.xml     | 6 +++---
 tools/drep/drep_dereplicate.xml | 4 ++--
 tools/drep/macros.xml           | 2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/tools/drep/drep_compare.xml b/tools/drep/drep_compare.xml
index b645699ec3a..18950f05b61 100644
--- a/tools/drep/drep_compare.xml
+++ b/tools/drep/drep_compare.xml
@@ -1,10 +1,10 @@
-<tool id="drep_compare" name="dRep compare" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" python_template_version="3.5">
+<tool id="drep_compare" name="dRep compare" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>compare a list of genomes</description>
-    <expand macro="biotools" />
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements" />
+    <expand macro="biotools" />
+    <expand macro="requirements" />   
     <command detect_errors="exit_code"><![CDATA[
 @PREPARE_GENOMES@
 dRep compare outdir
diff --git a/tools/drep/drep_dereplicate.xml b/tools/drep/drep_dereplicate.xml
index 1b3af7d4d10..2b2a5730754 100644
--- a/tools/drep/drep_dereplicate.xml
+++ b/tools/drep/drep_dereplicate.xml
@@ -1,9 +1,9 @@
-<tool id="drep_dereplicate" name="dRep dereplicate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" python_template_version="3.5">
+<tool id="drep_dereplicate" name="dRep dereplicate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>De-replicate a list of genomes</description>
-    <expand macro="biotools" />
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools" />
     <expand macro="requirements">
         <requirement type="package" version="1.2.2">checkm-genome</requirement>
     </expand>
diff --git a/tools/drep/macros.xml b/tools/drep/macros.xml
index aace1295684..5234c1da5c7 100644
--- a/tools/drep/macros.xml
+++ b/tools/drep/macros.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">3.4.5</token>
+    <token name="@TOOL_VERSION@">3.5.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="biotools">