From 4b7357b43864305214a9226c0123aa602cad74f2 Mon Sep 17 00:00:00 2001
From: Engy Nasr <engynasr94@gmail.com>
Date: Mon, 11 Mar 2024 12:56:45 +0100
Subject: [PATCH 1/2] Update .shed.yml correcting remote repository url

---
 tool_collections/taxonomy/kraken2tax/.shed.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tool_collections/taxonomy/kraken2tax/.shed.yml b/tool_collections/taxonomy/kraken2tax/.shed.yml
index 51acb728..eac56444 100644
--- a/tool_collections/taxonomy/kraken2tax/.shed.yml
+++ b/tool_collections/taxonomy/kraken2tax/.shed.yml
@@ -8,5 +8,5 @@ long_description: |
 name: kraken2tax
 owner: devteam
 homepage_url: https://bitbucket.org/natefoo/taxonomy
-remote_repository_url: https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/taxonomy/kraken2tax/
+remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/kraken2tax
 type: unrestricted

From 63ccf2b0c98726dc95b9b441b060d9b3f791023e Mon Sep 17 00:00:00 2001
From: Engy Nasr <engynasr94@gmail.com>
Date: Mon, 11 Mar 2024 12:58:44 +0100
Subject: [PATCH 2/2] Update kraken2tax.xml

adding biotools tool's id
---
 tool_collections/taxonomy/kraken2tax/kraken2tax.xml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tool_collections/taxonomy/kraken2tax/kraken2tax.xml b/tool_collections/taxonomy/kraken2tax/kraken2tax.xml
index 60cdd392..4f619e1f 100644
--- a/tool_collections/taxonomy/kraken2tax/kraken2tax.xml
+++ b/tool_collections/taxonomy/kraken2tax/kraken2tax.xml
@@ -1,5 +1,8 @@
 <tool id="Kraken2Tax" name="Convert Kraken" version="1.2+galaxy0">
   <description>data to Galaxy taxonomy representation</description>
+    <xrefs>
+        <xref type="bio.tools">kraken2tax</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="5.1.0">gawk</requirement>
         <requirement type="package" version="1.0.1">gb_taxonomy_tools</requirement>