From e43a906cc38f5da290c9d9d5ae63b79c408f092a Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Wed, 25 Sep 2024 11:16:50 +0200
Subject: [PATCH] fix tests for new multiQC

---
 .../scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml        | 6 ++----
 .../scrna-seq-fastq-to-matrix-10x-v3-tests.yml              | 6 ++----
 2 files changed, 4 insertions(+), 8 deletions(-)

diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml
index c499aa9b0..723587f8b 100644
--- a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml
+++ b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex-tests.yml
@@ -55,10 +55,8 @@
   outputs:
     MultiQC_STARsolo:
       asserts:
-        - that: "has_text_matching"
-          expression: ">subsample</th><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped_percent \"><div class=\"wrapper\"><span class=\"bar\""
-        - that: "has_text_matching"
-          expression: "></span><span class=\"val\">3[0-9].[0-9]%</span></div></td><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped \"><div class=\"wrapper\"><span class=\"bar\""
+        has_text_matching:
+          expression: "<td class=\"data-coloured mqc_generalstats_star_uniquely_mapped_percent_1 \"><div class=\"wrapper\"><span class=\"bar\"></span><span class=\"val\">33.[0-9]<span class=\"mqc_small_space\"></span>%</span></div></td>"
     Seurat input for gene expression (filtered):
       attributes: { collection_type: list:list }
       element_tests:
diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml
index 98fd308e3..dcfa61c1d 100644
--- a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml
+++ b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3-tests.yml
@@ -30,10 +30,8 @@
   outputs:
     'MultiQC on input dataset(s): Webpage':
       asserts:
-        - that: "has_text_matching"
-          expression: ">subsample</th><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped_percent \"><div class=\"wrapper\"><span class=\"bar\""
-        - that: "has_text_matching"
-          expression: "></span><span class=\"val\">3[0-9].[0-9]%</span></div></td><td class=\"data-coloured mqc-generalstats-star-uniquely_mapped \"><div class=\"wrapper\"><span class=\"bar\""
+        has_text_matching:
+          expression: "<td class=\"data-coloured mqc_generalstats_star_uniquely_mapped_percent_1 \"><div class=\"wrapper\"><span class=\"bar\"></span><span class=\"val\">33.[0-9]<span class=\"mqc_small_space\"></span>%</span></div></td>"
     Seurat input for gene expression (filtered):
       attributes: { collection_type: list:list }
       element_tests: