diff --git a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr-tests.yml b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr-tests.yml index 76b13e4d27..3eb44a5e61 100644 --- a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr-tests.yml +++ b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr-tests.yml @@ -50,8 +50,8 @@ n: 4 star: asserts: - has_text: - text: "GSM461177\t1051466.0\t35.0\t871202.0\t82.86\t35.4\t51184.0\t50995.0\t50810.0\t343.0\t12.0\t19.0\t0.48\t0.0\t1.48\t0.0\t1.36\t91809.0\t8.73\t34515.0\t3.28\t0.0\t4.76\t0.37\t0\t50050\t3890" + has_text_matching: + expression: "GSM461177\t1051466.0\t35.0\t871202.0\t82.86\t35.4\t51184.0\t50995.0\t50810.0\t343.0\t12.0\t19.0\t0.48\t0.0\t1.48\t0.0\t1.36\t9180[89].0\t8.73\t34515.0\t3.28\t0.0\t4.76\t0.37\t0\t5005[01]\t3890" MultiQC webpage: asserts: - that: "has_text" @@ -84,14 +84,14 @@ element_tests: GSM461177: asserts: - has_text: - text: "FBgn0031217\t-\t-\tFBgn0031217\tCG11377\t-\tchr2L:102379-104142\t-\t-\t32.1016\t22.1771\t42.0259\tOK" + has_text_matching: + expression: "FBgn0031217\t-\t-\tFBgn0031217\tCG11377\t-\tchr2L:102379-104142\t-\t-\t32.1016\t22.1771\t42.02[0-9]*\tOK" genes_expression_stringtie: element_tests: GSM461177: asserts: - has_text: - text: "FBgn0031217 CG11377 chr2L + 102380 104142 0.994315 32.391769 56.255165" + has_text_matching: + text: "FBgn0031217\s+CG11377\s+chr2L\s++\s+102380\s+104142\s+0.994315\s+32.391769\s+56.255165" both strands coverage: element_tests: GSM461177: