Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ansible-galaxy-tools does not pass the travis test anymore #68

Open
drosofff opened this issue Aug 24, 2020 · 0 comments
Open

ansible-galaxy-tools does not pass the travis test anymore #68

drosofff opened this issue Aug 24, 2020 · 0 comments

Comments

@drosofff
Copy link
Member

If you rerun the travis test of this ansible role, (which I cannot do myself), you will see that it does not pass anymore with this error:

TASK [ansible-galaxy-tools : Install Tool Shed tools] **************************
failed: [localhost] (item={u'owner': u'devteam', u'tool_shed_url': u'https://toolshed.g2.bx.psu.edu', u'tool_panel_section_id': u'cshl_library_information', u'name': u'fastqc', u'revisions': [u'8c650f7f76e9', u'd2cf2c0c8a11']}) => {"changed": false, "cmd": ["/tmp/venv/bin/shed-tools", "install", "-y", "name: fastqc\nowner: devteam\nrevisions:\n- 8c650f7f76e9\n- d2cf2c0c8a11\ntool_panel_section_id: cshl_library_information\ntool_shed_url: https://toolshed.g2.bx.psu.edu\n", "-a", "admin", "-g", "http://127.0.0.1:8080"], "delta": "0:00:00.209664", "end": "2020-08-24 13:02:18.132442", "failed_when_result": true, "item": {"name": "fastqc", "owner": "devteam", "revisions": ["8c650f7f76e9", "d2cf2c0c8a11"], "tool_panel_section_id": "cshl_library_information", "tool_shed_url": "https://toolshed.g2.bx.psu.edu"}, "msg": "non-zero return code", "rc": 1, "start": "2020-08-24 13:02:17.922778", "stderr": "Traceback (most recent call last):\n  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>\n    sys.exit(main())\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main\n    install_tool_manager.install_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories\n    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions\n    installed_repositories_list = tool_shed_client.get_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories\n    return self._get()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get\n    status_code=r.status_code)\nbioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}", "stderr_lines": ["Traceback (most recent call last):", "  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>", "    sys.exit(main())", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main", "    install_tool_manager.install_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories", "    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions", "    installed_repositories_list = tool_shed_client.get_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories", "    return self._get()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get", "    status_code=r.status_code)", "bioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}"], "stdout": "", "stdout_lines": []}
failed: [localhost] (item={u'owner': u'iuc', u'tool_panel_section_label': u'BED tools', u'name': u'bedtools', u'revisions': [u'2cd7e321d259']}) => {"changed": false, "cmd": ["/tmp/venv/bin/shed-tools", "install", "-y", "name: bedtools\nowner: iuc\nrevisions:\n- 2cd7e321d259\ntool_panel_section_label: BED tools\n", "-a", "admin", "-g", "http://127.0.0.1:8080"], "delta": "0:00:00.226166", "end": "2020-08-24 13:02:18.473471", "failed_when_result": true, "item": {"name": "bedtools", "owner": "iuc", "revisions": ["2cd7e321d259"], "tool_panel_section_label": "BED tools"}, "msg": "non-zero return code", "rc": 1, "start": "2020-08-24 13:02:18.247305", "stderr": "Traceback (most recent call last):\n  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>\n    sys.exit(main())\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main\n    install_tool_manager.install_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories\n    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions\n    installed_repositories_list = tool_shed_client.get_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories\n    return self._get()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get\n    status_code=r.status_code)\nbioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}", "stderr_lines": ["Traceback (most recent call last):", "  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>", "    sys.exit(main())", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main", "    install_tool_manager.install_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories", "    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions", "    installed_repositories_list = tool_shed_client.get_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories", "    return self._get()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get", "    status_code=r.status_code)", "bioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}"], "stdout": "", "stdout_lines": []}
failed: [localhost] (item={u'owner': u'devteam', u'tool_shed_url': u'https://toolshed.g2.bx.psu.edu', u'name': u'data_manager_fetch_genome_dbkeys_all_fasta', u'revisions': [u'b1bc53e9bbc5']}) => {"changed": false, "cmd": ["/tmp/venv/bin/shed-tools", "install", "-y", "name: data_manager_fetch_genome_dbkeys_all_fasta\nowner: devteam\nrevisions:\n- b1bc53e9bbc5\ntool_shed_url: https://toolshed.g2.bx.psu.edu\n", "-a", "admin", "-g", "http://127.0.0.1:8080"], "delta": "0:00:00.203915", "end": "2020-08-24 13:02:18.789717", "failed_when_result": true, "item": {"name": "data_manager_fetch_genome_dbkeys_all_fasta", "owner": "devteam", "revisions": ["b1bc53e9bbc5"], "tool_shed_url": "https://toolshed.g2.bx.psu.edu"}, "msg": "non-zero return code", "rc": 1, "start": "2020-08-24 13:02:18.585802", "stderr": "Traceback (most recent call last):\n  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>\n    sys.exit(main())\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main\n    install_tool_manager.install_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories\n    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list\n  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions\n    installed_repositories_list = tool_shed_client.get_repositories()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories\n    return self._get()\n  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get\n    status_code=r.status_code)\nbioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}", "stderr_lines": ["Traceback (most recent call last):", "  File \"/tmp/venv/bin/shed-tools\", line 8, in <module>", "    sys.exit(main())", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 744, in main", "    install_tool_manager.install_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 558, in install_repositories", "    installed_repositories_list = installed_repository_revisions(self.gi)  # installed tools list", "  File \"/tmp/venv/lib/python2.7/site-packages/ephemeris/shed_tools.py\", line 157, in installed_repository_revisions", "    installed_repositories_list = tool_shed_client.get_repositories()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py\", line 36, in get_repositories", "    return self._get()", "  File \"/tmp/venv/lib/python2.7/site-packages/bioblend/galaxy/client.py\", line 136, in _get", "    status_code=r.status_code)", "bioblend.ConnectionError: GET: error 403: '{\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}', 0 attempts left: {\"err_msg\": \"Provided API key is not valid.\", \"err_code\": 403001}"], "stdout": "", "stdout_lines": []}
	to retry, use: --limit @/home/travis/build/ARTbio/ansible-galaxy-tools/test_playbook.retry
PLAY RECAP *********************************************************************
localhost                  : ok=5    changed=1    unreachable=0    failed=1  

Any thought welcome

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant