diff --git a/tools/biobb_pytorch/biobb_apply_mdae.xml b/tools/biobb_pytorch/biobb_apply_mdae.xml
index e6fa65d..f6021ae 100644
--- a/tools/biobb_pytorch/biobb_apply_mdae.xml
+++ b/tools/biobb_pytorch/biobb_apply_mdae.xml
@@ -1,7 +1,7 @@
 <tool id="biobb_pytorch_apply_mdae" name="ApplyMdae" version="@TOOL_VERSION@" profile="22.05">
     <description>Apply a Molecular Dynamics AutoEncoder (MDAE) PyTorch model.</description>
     <macros>
-      <token name="@TOOL_VERSION@">4.2.1</token>
+      <token name="@TOOL_VERSION@">5.0.0</token>
     </macros>
 
     <requirements>
diff --git a/tools/biobb_pytorch/biobb_train_mdae.xml b/tools/biobb_pytorch/biobb_train_mdae.xml
index 68c03c3..8d59aed 100644
--- a/tools/biobb_pytorch/biobb_train_mdae.xml
+++ b/tools/biobb_pytorch/biobb_train_mdae.xml
@@ -1,7 +1,7 @@
 <tool id="biobb_pytorch_train_mdae" name="TrainMdae" version="@TOOL_VERSION@" profile="22.05">
     <description>Train a Molecular Dynamics AutoEncoder (MDAE) PyTorch model</description>
     <macros>
-      <token name="@TOOL_VERSION@">4.2.1</token>
+      <token name="@TOOL_VERSION@">5.0.0</token>
     </macros>
 
     <requirements>