Take includes when provided via CustomConfiguration

[gagoar]

This Pr fixes #36

[codecov]

Codecov Report

Merging #37 into master will not change coverage.
The diff coverage is 100.00%.

@@            Coverage Diff            @@
##            master       #37   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           10        10           
  Lines          197       202    +5     
  Branches        30        31    +1     
=========================================
+ Hits           197       202    +5     

Flag	Coverage Δ
#unittests	100.00% <100.00%> (ø)

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Impacted Files	Coverage Δ
src/commands/generate.ts	100.00% <ø> (ø)
src/utils/getCustomConfiguration.ts	100.00% <100.00%> (ø)
src/utils/getGlobalOptions.ts	100.00% <100.00%> (ø)

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