README.md

wol-pangenome

ncbi-datasets-parser.py

- filters down the complete wolbachia genome dataset to have an unbaised representation of different wolbachia supergroups

extract-gene-seq.py

- functions for extracting gene sequences from a dataset of genomic fastas based on gene-ID or 16S sequence predictions 

binarize-tree.py

- uses ete3 toolkit to binarize guide tree for cactus 
- ete3 must be installed in seperate env
    - conda create -n ete3 python=3
    - conda activate ete3
    - conda install -c etetoolkit ete3 ete_toolchain