submit civic record to production using clinvar-this

[korikuzma]

• Submit a CIViC record to production using ClinVar This. @ahwagner did you have a preference on which CIViC record I submit?
• Use Wagner Lab account
• Compare this submission to CIViC's submission using spreadsheet

[ahwagner]

No preference, other than it coming from the CIViC submission spreadsheet

[korikuzma]

I'll stick with our good friend BRAF V600E and use civic.aid:7

[korikuzma]

I will also use civic.aid:55 to test onco submission

[korikuzma]

Submitted both.

[korikuzma]

Oh interesting. Both submissions had errors on prod, but passed the test/prod api dry runs. All errors are due to ClinicalSignificance.citation. Error messages look as follows:

"PubMed:25265492;PubMed:23020132;PubMed:28891408;PubMed:25399551;https://civicdb.org/links/evidence/6178;https://civicdb.org/links/evidence/6938;https://civicdb.org/links/evidence/3758;https://civicdb.org/links/evidence/6940 is an invalid citation. Please check both the name of the database and the identifier from that database"

I wonder if we can only submit either db/id OR url?

[korikuzma]

So it doesn't like the CIViC DB URLs. I'm going to remove these and only submit the pubmed ID citations.

[korikuzma]

Onco submission processed successfully on the test api after removing the civicdb urls. Still waiting for clinical impact submission to be processed.

[korikuzma]

Submitted. Now we wait!