CigarStats.apply
could give better error if internal clipping operators found
#834
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CigarStats.apply
could give better error if internal clipping operators found
#834
After #761, this
apply
method will fail during this loop if a clipping operator is found within the read, as it halts prematurely here:fgbio/src/main/scala/com/fulcrumgenomics/alignment/Alignment.scala
Lines 124 to 131 in 57a72b4
The error just says that the cigar did not consume all elements:
It would be helpful if the error specified that there were clipping operators found in the middle of the read.
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