diff --git a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala index a2ea75414..b8f5274d9 100644 --- a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala +++ b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala @@ -47,7 +47,7 @@ import com.fulcrumgenomics.util.{Io, ProgressLogger} |Some tools (e.g. BCL Convert) may reverse-complement UMIs on R2 and add a prefix to indicate that the sequence |has been reverse-complemented. The `--rc-prefix` option specifies the prefix character(s) and causes them to |be removed. Additionally, if the `--normalize-rc-umis` flag is specified, any reverse-complemented UMIs will - |be normalized (i.e., reverse-completemented back to be in the forward orientation). + |be normalized (i.e., reverse-complemented back to be in the forward orientation). | |To obtain behavior similar to `umi_tools`' `--umi-separator=":r"`, specify the delimiter and |prefix separately, i.e. `--field-delimiter=":"` and `--rc-prefix="r"`.