diff --git a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala index 5b0ee69cd..2a0520ef1 100644 --- a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala +++ b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala @@ -584,8 +584,8 @@ class GroupReadsByUmi @arg(flag='x', doc= """ |DEPRECATED: this option will be removed in future versions and inter-contig reads will be |automatically processed.""") - @deprecated val allowInterContig: Boolean = true, -@arg(flag='@', doc="Number of threads to use when comparing UMIs. Only recommended for amplicon or similar data.") val threads: Int = 1, + @deprecated val allowInterContig: Boolean = true, + @arg(flag='@', doc="Number of threads to use when comparing UMIs. Only recommended for amplicon or similar data.") val threads: Int = 1, )extends FgBioTool with LazyLogging { import GroupReadsByUmi._