diff --git a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala index 32f0e506b..631fb8b35 100644 --- a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala +++ b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala @@ -440,7 +440,7 @@ object Strategy extends FgBioEnum[Strategy] { | 4. Read Name | |During grouping, reads are filtered out if a) all reads with the same queryname are unmapped, b) any primary - |read has mapping quality < `min-map-q` (default=1), or c) the primary mappings for R1 and R1 are on different + |read has mapping quality < `min-map-q` (default=1), or c) the primary mappings for R1 and R2 are on different |chromosomes and `--allow-inter-contig` has been set to false. | |Grouping of UMIs is performed by one of four strategies: