diff --git a/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala b/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala index a6d2bbc9c..34af1f40b 100644 --- a/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala +++ b/src/main/scala/com/fulcrumgenomics/fastq/DemuxFastqs.scala @@ -234,7 +234,7 @@ object DemuxFastqs { |If multiple FASTQs are present for each sub-read, then the FASTQs for each sub-read should be concatenated together |prior to running this tool (ex. `cat s_R1_L001.fq.gz s_R1_L002.fq.gz > s_R1.fq.gz`). | - |(Read structures)[https://github.com/fulcrumgenomics/fgbio/wiki/Read-Structures] are made up of `` + |[Read structures](https://github.com/fulcrumgenomics/fgbio/wiki/Read-Structures) are made up of `` |pairs much like the `CIGAR` string in BAM files. Four kinds of operators are recognized: | |1. `T` identifies a template read