You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Jun 20, 2024. It is now read-only.
root ==> scatter ==> gather ==> new DeleteFiles(dir)
I get an exception:
ArrayBuffer(WrappedArray(Failed getTasks for [SingleGather]: ), dagr.core.execsystem.TaskException: java.lang.IllegalStateException: Gather.getTasks called before sources populated.
at dagr.core.execsystem.TaskManager.invokeGetTasks(TaskManager.scala:382)
at dagr.core.execsystem.TaskManager.$anonfun$invokeCallbacksAndGetTasks$2(TaskManager.scala:451)
at dagr.core.execsystem.TaskManager.$anonfun$invokeCallbacksAndGetTasks$2$adapted(TaskManager.scala:447)
at scala.collection.immutable.Set$Set2.foreach(Set.scala:130)
at dagr.core.execsystem.TaskManager.invokeCallbacksAndGetTasks(TaskManager.scala:447)
at dagr.core.execsystem.TaskManager.stepExecution(TaskManager.scala:511)
at dagr.core.execsystem.TaskManager.runToCompletion(TaskManager.scala:548)
at dagr.core.cmdline.DagrCoreArgs.execute(DagrCoreMain.scala:190)
at dagr.core.cmdline.DagrCoreMain.makeItSo(DagrCoreMain.scala:237)
at dagr.core.cmdline.DagrCoreMain.makeItSoAndExit(DagrCoreMain.scala:213)
at dagr.core.cmdline.DagrCoreMain$.main(DagrCoreMain.scala:55)
at dagr.core.cmdline.DagrCoreMain.main(DagrCoreMain.scala)
Caused by: java.lang.IllegalStateException: Gather.getTasks called before sources populated.
at dagr.tasks.ScatterGather$SingleGather.getTasks(ScatterGather.scala:83)
... 12 more
The text was updated successfully, but these errors were encountered:
Sign up for freeto subscribe to this conversation on GitHub.
Already have an account?
Sign in.
For example, see this pipeline: https://github.com/fulcrumgenomics/dagr/blob/master/pipelines/src/main/scala/dagr/pipelines/ParallelHaplotypeCaller.scala
If I change this:
to this:
I get an exception:
The text was updated successfully, but these errors were encountered: