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cluster.yaml
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cluster.yaml
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__default__:
submission_string: " "
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
annotatate_delta:
h_vmem: 24G
tmem: 24G
h_rt: 72:00:00
normalize_annotate:
submission_string: " "
h_vmem: 16G
tmem: 16G
h_rt: 72:00:00
majiq_build:
submission_string: "-pe smp 4 -R y"
h_vmem: 2G
tmem: 2G
h_rt: 72:00:00
squashed_normalize_annotate:
submission_string: " "
h_vmem: 32G
tmem: 32G
h_rt: 72:00:00
majiq_psi:
h_vmem: 2G
tmem: 2G
h_rt: 72:00:00
submission_string: "-pe smp 2 -R y"
majiq_single_psi:
h_vmem: 2G
tmem: 2G
h_rt: 72:00:00
submission_string: "-pe smp 2 -R y"
majiq_psi_tsv:
h_vmem: 1G
tmem: 1G
submission_string: "-pe smp 4 -R y"
h_rt: 72:00:00
majiq_delta_psi:
h_vmem: 4G
tmem: 4G
h_rt: 72:00:00
submission_string: "-pe smp 2 -R y"
majiq_delta_psi_tsv:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: "-pe smp 2 -R y"
majiq_annotate_junctions:
h_vmem: 4G
tmem: 4G
h_rt: 72:00:00
majiq_psi_parse:
h_vmem: 2G
tmem: 2G
h_rt: 72:00:00
star_tabs_to_beds:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
assembly:
h_vmem: 2G
tmem: 2G
h_rt: 72:00:00
submission_string: "-pe smp 4 -R y"
compose_merge:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: " "
compare_assemblies:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: " "
merge_assemblies:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: " "
diffexp:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: "-pe smp 8 -R y"
merge_scallop_gtfs:
h_vmem: 1G
tmem: 1G
h_rt: 72:00:00
submission_string: "-pe smp 2 -R y"
whippet_psi:
h_vmem: 16G
tmem: 16G
h_rt: 72:00:00