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We've been hitting this test failure for a few days:
FAILED tests/tasks/test_import_ome_zarr.py::test_import_ome_zarr_image_BIA - TimeoutError: [Errno 60] Operation timed out
The failure has to do with FTP access to BIA
# Download an existing OME-Zarr from BIA ftp = FTP("ftp.ebi.ac.uk") ftp.login() ftp.cwd("biostudies/fire/S-BIAD/843/S-BIAD843/Files") fname = "WD1_15-02_WT_confocalonly.ome.zarr.zip" with (tmp_path / fname).open("wb") as fp: > ftp.retrbinary(f"RETR {fname}", fp.write) tests/tasks/test_import_ome_zarr.py:290:
which fails with a TimeoutError.
TimeoutError
This was a ConnectionRefusedError a few days back - see https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/runs/12253006499/job/34183395372.
ConnectionRefusedError
The text was updated successfully, but these errors were encountered:
Do we run this test regularly? I thought we had the BIA tested disabled to avoid such potential issues?
Sorry, something went wrong.
Do we run this test regularly?
Yes, it is part of the test suite. But I am now deactivating it, since its irregular failures introduce too much noise.
If we ever decide to systematically test support for some BIA datasets, then we should first address #565.
test_import_ome_zarr_image_BIA
Successfully merging a pull request may close this issue.
We've been hitting this test failure for a few days:
The failure has to do with FTP access to BIA
which fails with a
TimeoutError
.This was a
ConnectionRefusedError
a few days back - see https://github.com/fractal-analytics-platform/fractal-tasks-core/actions/runs/12253006499/job/34183395372.The text was updated successfully, but these errors were encountered: