From 800120712071d1b75460703251153555f357c5fb Mon Sep 17 00:00:00 2001 From: Matt Topol Date: Fri, 16 Sep 2022 11:20:34 -0400 Subject: [PATCH] ARROW-17734: [Go] Implement Take for Lists and Dense Union (#14130) Authored-by: Matt Topol Signed-off-by: Matt Topol --- go/arrow/array/bufferbuilder.go | 3 + go/arrow/compute/executor.go | 5 + go/arrow/compute/go.mod | 11 +- go/arrow/compute/go.sum | 280 ++---------------- go/arrow/compute/internal/exec/span.go | 2 + .../internal/kernels/vector_selection.go | 175 ++++++++++- go/arrow/compute/selection.go | 90 +++++- go/arrow/compute/vector_selection_test.go | 117 ++++++++ 8 files changed, 398 insertions(+), 285 deletions(-) diff --git a/go/arrow/array/bufferbuilder.go b/go/arrow/array/bufferbuilder.go index 6a91031c22bef..f8a6bed255e79 100644 --- a/go/arrow/array/bufferbuilder.go +++ b/go/arrow/array/bufferbuilder.go @@ -131,6 +131,9 @@ func (b *bufferBuilder) Finish() (buffer *memory.Buffer) { buffer = b.buffer b.buffer = nil b.Reset() + if buffer == nil { + buffer = memory.NewBufferBytes(nil) + } return } diff --git a/go/arrow/compute/executor.go b/go/arrow/compute/executor.go index 0e09e4afc0e5e..fce290c092b86 100644 --- a/go/arrow/compute/executor.go +++ b/go/arrow/compute/executor.go @@ -20,6 +20,7 @@ import ( "context" "fmt" "math" + "runtime" "sync" "github.com/apache/arrow/go/v10/arrow" @@ -44,6 +45,7 @@ type ExecCtx struct { PreallocContiguous bool Registry FunctionRegistry ExecChannelSize int + NP int } type ctxExecKey struct{} @@ -70,6 +72,9 @@ func init() { defaultExecCtx.PreallocContiguous = true defaultExecCtx.Registry = GetFunctionRegistry() defaultExecCtx.ExecChannelSize = 10 + // default level of parallelism + // set to 1 to disable parallelization + defaultExecCtx.NP = runtime.NumCPU() } // SetExecCtx returns a new child context containing the passed in ExecCtx diff --git a/go/arrow/compute/go.mod b/go/arrow/compute/go.mod index 224d56faff4f2..9aa0379f6891b 100644 --- a/go/arrow/compute/go.mod +++ b/go/arrow/compute/go.mod @@ -23,8 +23,9 @@ replace github.com/apache/arrow/go/v10 => ../../ require ( github.com/apache/arrow/go/v10 v10.0.0-00010101000000-000000000000 github.com/stretchr/testify v1.8.0 - golang.org/x/exp v0.0.0-20220722155223-a9213eeb770e - golang.org/x/sys v0.0.0-20220808155132-1c4a2a72c664 + golang.org/x/exp v0.0.0-20220827204233-334a2380cb91 + golang.org/x/sync v0.0.0-20220819030929-7fc1605a5dde + golang.org/x/sys v0.0.0-20220829200755-d48e67d00261 golang.org/x/xerrors v0.0.0-20220609144429-65e65417b02f ) @@ -32,16 +33,18 @@ require ( github.com/andybalholm/brotli v1.0.4 // indirect github.com/apache/thrift v0.16.0 // indirect github.com/davecgh/go-spew v1.1.1 // indirect - github.com/goccy/go-json v0.9.10 // indirect + github.com/goccy/go-json v0.9.11 // indirect github.com/golang/snappy v0.0.4 // indirect - github.com/google/flatbuffers v2.0.6+incompatible // indirect + github.com/google/flatbuffers v2.0.8+incompatible // indirect github.com/klauspost/asmfmt v1.3.2 // indirect github.com/klauspost/compress v1.15.9 // indirect github.com/klauspost/cpuid/v2 v2.0.9 // indirect + github.com/kr/text v0.2.0 // indirect github.com/minio/asm2plan9s v0.0.0-20200509001527-cdd76441f9d8 // indirect github.com/minio/c2goasm v0.0.0-20190812172519-36a3d3bbc4f3 // indirect github.com/pierrec/lz4/v4 v4.1.15 // indirect github.com/pmezard/go-difflib v1.0.0 // indirect + github.com/rogpeppe/go-internal v1.9.0 // indirect github.com/zeebo/xxh3 v1.0.2 // indirect golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4 // indirect golang.org/x/tools v0.1.12 // indirect diff --git a/go/arrow/compute/go.sum b/go/arrow/compute/go.sum index b05bdd419c7c4..cc95f335c211c 100644 --- a/go/arrow/compute/go.sum +++ b/go/arrow/compute/go.sum @@ -1,320 +1,74 @@ -cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= -gioui.org v0.0.0-20210308172011-57750fc8a0a6/go.mod h1:RSH6KIUZ0p2xy5zHDxgAM4zumjgTw83q2ge/PI+yyw8= -git.sr.ht/~sbinet/gg v0.3.1/go.mod h1:KGYtlADtqsqANL9ueOFkWymvzUvLMQllU5Ixo+8v3pc= -github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU= -github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo= github.com/JohnCGriffin/overflow v0.0.0-20211019200055-46fa312c352c h1:RGWPOewvKIROun94nF7v2cua9qP+thov/7M50KEoeSU= -github.com/JohnCGriffin/overflow v0.0.0-20211019200055-46fa312c352c/go.mod h1:X0CRv0ky0k6m906ixxpzmDRLvX58TFUKS2eePweuyxk= -github.com/ajstarks/deck v0.0.0-20200831202436-30c9fc6549a9/go.mod h1:JynElWSGnm/4RlzPXRlREEwqTHAN3T56Bv2ITsFT3gY= -github.com/ajstarks/deck/generate v0.0.0-20210309230005-c3f852c02e19/go.mod h1:T13YZdzov6OU0A1+RfKZiZN9ca6VeKdBdyDV+BY97Tk= -github.com/ajstarks/svgo v0.0.0-20180226025133-644b8db467af/go.mod h1:K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw= -github.com/ajstarks/svgo v0.0.0-20211024235047-1546f124cd8b/go.mod h1:1KcenG0jGWcpt8ov532z81sp/kMMUG485J2InIOyADM= github.com/andybalholm/brotli v1.0.4 h1:V7DdXeJtZscaqfNuAdSRuRFzuiKlHSC/Zh3zl9qY3JY= github.com/andybalholm/brotli v1.0.4/go.mod h1:fO7iG3H7G2nSZ7m0zPUDn85XEX2GTukHGRSepvi9Eig= -github.com/antihax/optional v1.0.0/go.mod h1:uupD/76wgC+ih3iEmQUL+0Ugr19nfwCT1kdvxnR2qWY= github.com/apache/thrift v0.16.0 h1:qEy6UW60iVOlUy+b9ZR0d5WzUWYGOo4HfopoyBaNmoY= github.com/apache/thrift v0.16.0/go.mod h1:PHK3hniurgQaNMZYaCLEqXKsYK8upmhPbmdP2FXSqgU= -github.com/boombuler/barcode v1.0.0/go.mod h1:paBWMcWSl3LHKBqUq+rly7CNSldXjb2rDl3JlRe0mD8= -github.com/boombuler/barcode v1.0.1/go.mod h1:paBWMcWSl3LHKBqUq+rly7CNSldXjb2rDl3JlRe0mD8= -github.com/census-instrumentation/opencensus-proto v0.2.1/go.mod h1:f6KPmirojxKA12rnyqOA5BBL4O983OfeGPqjHWSTneU= -github.com/cespare/xxhash/v2 v2.1.1/go.mod h1:VGX0DQ3Q6kWi7AoAeZDth3/j3BFtOZR5XLFGgcrjCOs= -github.com/client9/misspell v0.3.4/go.mod h1:qj6jICC3Q7zFZvVWo7KLAzC3yx5G7kyvSDkc90ppPyw= -github.com/cncf/udpa/go v0.0.0-20191209042840-269d4d468f6f/go.mod h1:M8M6+tZqaGXZJjfX53e64911xZQV5JYwmTeXPW+k8Sc= -github.com/cncf/udpa/go v0.0.0-20201120205902-5459f2c99403/go.mod h1:WmhPx2Nbnhtbo57+VJT5O0JRkEi1Wbu0z5j0R8u5Hbk= -github.com/cncf/udpa/go v0.0.0-20210930031921-04548b0d99d4/go.mod h1:6pvJx4me5XPnfI9Z40ddWsdw2W/uZgQLFXToKeRcDiI= -github.com/cncf/xds/go v0.0.0-20210922020428-25de7278fc84/go.mod h1:eXthEFrGJvWHgFFCl3hGmgk+/aYT6PnTQLykKQRLhEs= -github.com/cncf/xds/go v0.0.0-20211001041855-01bcc9b48dfe/go.mod h1:eXthEFrGJvWHgFFCl3hGmgk+/aYT6PnTQLykKQRLhEs= -github.com/cncf/xds/go v0.0.0-20211011173535-cb28da3451f1/go.mod h1:eXthEFrGJvWHgFFCl3hGmgk+/aYT6PnTQLykKQRLhEs= +github.com/creack/pty v1.1.9/go.mod h1:oKZEueFk5CKHvIhNR5MUki03XCEU+Q6VDXinZuGJ33E= github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c= github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= -github.com/docopt/docopt-go v0.0.0-20180111231733-ee0de3bc6815/go.mod h1:WwZ+bS3ebgob9U8Nd0kOddGdZWjyMGR8Wziv+TBNwSE= -github.com/dustin/go-humanize v1.0.0/go.mod h1:HtrtbFcZ19U5GC7JDqmcUSB87Iq5E25KnS6fMYU6eOk= -github.com/envoyproxy/go-control-plane v0.9.0/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4= -github.com/envoyproxy/go-control-plane v0.9.1-0.20191026205805-5f8ba28d4473/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4= -github.com/envoyproxy/go-control-plane v0.9.4/go.mod h1:6rpuAdCZL397s3pYoYcLgu1mIlRU8Am5FuJP05cCM98= -github.com/envoyproxy/go-control-plane v0.9.9-0.20201210154907-fd9021fe5dad/go.mod h1:cXg6YxExXjJnVBQHBLXeUAgxn2UodCpnH306RInaBQk= -github.com/envoyproxy/go-control-plane v0.10.2-0.20220325020618-49ff273808a1/go.mod h1:KJwIaB5Mv44NWtYuAOFCVOjcI94vtpEz2JU/D2v6IjE= -github.com/envoyproxy/protoc-gen-validate v0.1.0/go.mod h1:iSmxcyjqTsJpI2R4NaDN7+kN2VEUnK/pcBlmesArF7c= -github.com/fogleman/gg v1.2.1-0.20190220221249-0403632d5b90/go.mod h1:R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k= -github.com/fogleman/gg v1.3.0/go.mod h1:R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k= -github.com/ghodss/yaml v1.0.0/go.mod h1:4dBDuWmgqj2HViK6kFavaiC9ZROes6MMH2rRYeMEF04= -github.com/go-fonts/dejavu v0.1.0/go.mod h1:4Wt4I4OU2Nq9asgDCteaAaWZOV24E+0/Pwo0gppep4g= -github.com/go-fonts/latin-modern v0.2.0/go.mod h1:rQVLdDMK+mK1xscDwsqM5J8U2jrRa3T0ecnM9pNujks= -github.com/go-fonts/liberation v0.1.1/go.mod h1:K6qoJYypsmfVjWg8KOVDQhLc8UDgIK2HYqyqAO9z7GY= -github.com/go-fonts/liberation v0.2.0/go.mod h1:K6qoJYypsmfVjWg8KOVDQhLc8UDgIK2HYqyqAO9z7GY= -github.com/go-fonts/stix v0.1.0/go.mod h1:w/c1f0ldAUlJmLBvlbkvVXLAD+tAMqobIIQpmnUIzUY= -github.com/go-gl/glfw v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU= -github.com/go-latex/latex v0.0.0-20210118124228-b3d85cf34e07/go.mod h1:CO1AlKB2CSIqUrmQPqA0gdRIlnLEY0gK5JGjh37zN5U= -github.com/go-latex/latex v0.0.0-20210823091927-c0d11ff05a81/go.mod h1:SX0U8uGpxhq9o2S/CELCSUxEWWAuoCUcVCQWv7G2OCk= -github.com/go-pdf/fpdf v0.5.0/go.mod h1:HzcnA+A23uwogo0tp9yU+l3V+KXhiESpt1PMayhOh5M= -github.com/go-pdf/fpdf v0.6.0/go.mod h1:HzcnA+A23uwogo0tp9yU+l3V+KXhiESpt1PMayhOh5M= -github.com/goccy/go-json v0.9.10 h1:hCeNmprSNLB8B8vQKWl6DpuH0t60oEs+TAk9a7CScKc= -github.com/goccy/go-json v0.9.10/go.mod h1:6MelG93GURQebXPDq3khkgXZkazVtN9CRI+MGFi0w8I= -github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0/go.mod h1:E/TSTwGwJL78qG/PmXZO1EjYhfJinVAhrmmHX6Z8B9k= -github.com/golang/glog v0.0.0-20160126235308-23def4e6c14b/go.mod h1:SBH7ygxi8pfUlaOkMMuAQtPIUF8ecWP5IEl/CR7VP2Q= -github.com/golang/mock v1.1.1/go.mod h1:oTYuIxOrZwtPieC+H1uAHpcLFnEyAGVDL/k47Jfbm0A= +github.com/goccy/go-json v0.9.11 h1:/pAaQDLHEoCq/5FFmSKBswWmK6H0e8g4159Kc/X/nqk= +github.com/goccy/go-json v0.9.11/go.mod h1:6MelG93GURQebXPDq3khkgXZkazVtN9CRI+MGFi0w8I= github.com/golang/mock v1.5.0/go.mod h1:CWnOUgYIOo4TcNZ0wHX3YZCqsaM1I1Jvs6v3mP3KVu8= -github.com/golang/protobuf v1.2.0/go.mod h1:6lQm79b+lXiMfvg/cZm0SGofjICqVBUtrP5yJMmIC1U= -github.com/golang/protobuf v1.3.2/go.mod h1:6lQm79b+lXiMfvg/cZm0SGofjICqVBUtrP5yJMmIC1U= -github.com/golang/protobuf v1.3.3/go.mod h1:vzj43D7+SQXF/4pzW/hwtAqwc6iTitCiVSaWz5lYuqw= -github.com/golang/protobuf v1.4.0-rc.1/go.mod h1:ceaxUfeHdC40wWswd/P6IGgMaK3YpKi5j83Wpe3EHw8= -github.com/golang/protobuf v1.4.0-rc.1.0.20200221234624-67d41d38c208/go.mod h1:xKAWHe0F5eneWXFV3EuXVDTCmh+JuBKY0li0aMyXATA= -github.com/golang/protobuf v1.4.0-rc.2/go.mod h1:LlEzMj4AhA7rCAGe4KMBDvJI+AwstrUpVNzEA03Pprs= -github.com/golang/protobuf v1.4.0-rc.4.0.20200313231945-b860323f09d0/go.mod h1:WU3c8KckQ9AFe+yFwt9sWVRKCVIyN9cPHBJSNnbL67w= -github.com/golang/protobuf v1.4.0/go.mod h1:jodUvKwWbYaEsadDk5Fwe5c77LiNKVO9IDvqG2KuDX0= -github.com/golang/protobuf v1.4.1/go.mod h1:U8fpvMrcmy5pZrNK1lt4xCsGvpyWQ/VVv6QDs8UjoX8= -github.com/golang/protobuf v1.4.2/go.mod h1:oDoupMAO8OvCJWAcko0GGGIgR6R6ocIYbsSw735rRwI= -github.com/golang/protobuf v1.4.3/go.mod 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b/go/arrow/compute/internal/exec/span.go index 17a4e5378aa53..2e1775985f8f7 100644 --- a/go/arrow/compute/internal/exec/span.go +++ b/go/arrow/compute/internal/exec/span.go @@ -160,6 +160,8 @@ func (a *ArraySpan) MakeData() arrow.ArrayData { defer dict.Release() result.SetDictionary(dict) return result + } else if dt.ID() == arrow.DENSE_UNION || dt.ID() == arrow.SPARSE_UNION { + bufs[0] = nil } if len(a.Children) > 0 { diff --git a/go/arrow/compute/internal/kernels/vector_selection.go b/go/arrow/compute/internal/kernels/vector_selection.go index c4bfcca8bcde5..e2b4e4d351bf5 100644 --- a/go/arrow/compute/internal/kernels/vector_selection.go +++ b/go/arrow/compute/internal/kernels/vector_selection.go @@ -1070,20 +1070,20 @@ func takeExec(ctx *exec.KernelCtx, outputLen int64, values, indices *exec.ArrayS } } -type outputFn func(*exec.KernelCtx, int64, *exec.ArraySpan, *exec.ArraySpan, *exec.ExecResult, func(int64) error, func() error) error -type implFn func(*exec.KernelCtx, *exec.ExecSpan, int64, *exec.ExecResult, outputFn) error +type selectionOutputFn func(*exec.KernelCtx, int64, *exec.ArraySpan, *exec.ArraySpan, *exec.ExecResult, func(int64) error, func() error) error +type selectionImplFn func(*exec.KernelCtx, *exec.ExecSpan, int64, *exec.ExecResult, selectionOutputFn) error -func FilterExec(impl implFn, fn outputFn) exec.ArrayKernelExec { +func FilterExec(impl selectionImplFn) exec.ArrayKernelExec { return func(ctx *exec.KernelCtx, batch *exec.ExecSpan, out *exec.ExecResult) error { var ( selection = &batch.Values[1].Array outputLength = getFilterOutputSize(selection, ctx.State.(FilterState).NullSelection) ) - return impl(ctx, batch, outputLength, out, fn) + return impl(ctx, batch, outputLength, out, filterExec) } } -func TakeExec(impl implFn, fn outputFn) exec.ArrayKernelExec { +func TakeExec(impl selectionImplFn) exec.ArrayKernelExec { return func(ctx *exec.KernelCtx, batch *exec.ExecSpan, out *exec.ExecResult) error { if ctx.State.(TakeState).BoundsCheck { if err := checkIndexBounds(&batch.Values[1].Array, uint64(batch.Values[0].Array.Len)); err != nil { @@ -1091,11 +1091,11 @@ func TakeExec(impl implFn, fn outputFn) exec.ArrayKernelExec { } } - return impl(ctx, batch, batch.Values[1].Array.Len, out, fn) + return impl(ctx, batch, batch.Values[1].Array.Len, out, takeExec) } } -func VarBinaryImpl[OffsetT int32 | int64](ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn outputFn) error { +func VarBinaryImpl[OffsetT int32 | int64](ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn selectionOutputFn) error { var ( values = &batch.Values[0].Array selection = &batch.Values[1].Array @@ -1144,7 +1144,7 @@ func VarBinaryImpl[OffsetT int32 | int64](ctx *exec.KernelCtx, batch *exec.ExecS return nil } -func FSBImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn outputFn) error { +func FSBImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn selectionOutputFn) error { var ( values = &batch.Values[0].Array selection = &batch.Values[1].Array @@ -1177,6 +1177,149 @@ func FSBImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out return nil } +func ListImpl[OffsetT int32 | int64](ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn selectionOutputFn) error { + var ( + values = &batch.Values[0].Array + selection = &batch.Values[1].Array + + rawOffsets = exec.GetSpanOffsets[OffsetT](values, 1) + mem = exec.GetAllocator(ctx.Ctx) + offsetBuilder = newBufferBuilder[OffsetT](mem) + childIdxBuilder = newBufferBuilder[OffsetT](mem) + ) + + if values.Len > 0 { + dataLength := rawOffsets[values.Len] - rawOffsets[0] + meanListLen := float64(dataLength) / float64(values.Len) + childIdxBuilder.reserve(int(meanListLen)) + } + + offsetBuilder.reserve(int(outputLength) + 1) + var offset OffsetT + err := fn(ctx, outputLength, values, selection, out, + func(idx int64) error { + offsetBuilder.unsafeAppend(offset) + valueOffset := rawOffsets[idx] + valueLength := rawOffsets[idx+1] - valueOffset + offset += valueLength + childIdxBuilder.reserve(int(valueLength)) + for j := valueOffset; j < valueOffset+valueLength; j++ { + childIdxBuilder.unsafeAppend(j) + } + return nil + }, func() error { + offsetBuilder.unsafeAppend(offset) + return nil + }) + + if err != nil { + return err + } + + offsetBuilder.unsafeAppend(offset) + out.Buffers[1].WrapBuffer(offsetBuilder.finish()) + + out.Children = make([]exec.ArraySpan, 1) + out.Children[0].Type = exec.GetDataType[OffsetT]() + out.Children[0].Len = int64(childIdxBuilder.len()) + out.Children[0].Buffers[1].WrapBuffer(childIdxBuilder.finish()) + + return nil +} + +func FSLImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn selectionOutputFn) error { + var ( + values = &batch.Values[0].Array + selection = &batch.Values[1].Array + + listSize = values.Type.(*arrow.FixedSizeListType).Len() + baseOffset = values.Offset + + childIdxBuilder = array.NewInt64Builder(exec.GetAllocator(ctx.Ctx)) + ) + + // we need to take listSize elements even for null elements of indices + childIdxBuilder.Reserve(int(outputLength) * int(listSize)) + err := fn(ctx, outputLength, values, selection, out, + func(idx int64) error { + offset := (baseOffset + idx) * int64(listSize) + for j := offset; j < (offset + int64(listSize)); j++ { + childIdxBuilder.UnsafeAppend(j) + } + return nil + }, func() error { + for n := int32(0); n < listSize; n++ { + childIdxBuilder.AppendNull() + } + return nil + }) + + if err != nil { + return err + } + + arr := childIdxBuilder.NewArray() + defer arr.Release() + out.Children = make([]exec.ArraySpan, 1) + out.Children[0].TakeOwnership(arr.Data()) + return nil +} + +func DenseUnionImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, outputLength int64, out *exec.ExecResult, fn selectionOutputFn) error { + var ( + values = &batch.Values[0].Array + selection = &batch.Values[1].Array + + mem = exec.GetAllocator(ctx.Ctx) + valueOffsetBldr = newBufferBuilder[int32](mem) + childIdBldr = newBufferBuilder[int8](mem) + typeCodes = values.Type.(arrow.UnionType).TypeCodes() + childIndicesBldrs = make([]*array.Int32Builder, len(typeCodes)) + ) + + for i := range childIndicesBldrs { + childIndicesBldrs[i] = array.NewInt32Builder(mem) + } + + childIdBldr.reserve(int(outputLength)) + valueOffsetBldr.reserve(int(outputLength)) + + typedValues := values.MakeArray().(*array.DenseUnion) + defer typedValues.Release() + + err := fn(ctx, outputLength, values, selection, out, + func(idx int64) error { + childID := typedValues.ChildID(int(idx)) + childIdBldr.unsafeAppend(typeCodes[childID]) + valueOffset := typedValues.ValueOffset(int(idx)) + valueOffsetBldr.unsafeAppend(int32(childIndicesBldrs[childID].Len())) + childIndicesBldrs[childID].Append(valueOffset) + return nil + }, func() error { + childID := 0 + childIdBldr.unsafeAppend(typeCodes[childID]) + valueOffsetBldr.unsafeAppend(int32(childIndicesBldrs[childID].Len())) + childIndicesBldrs[childID].AppendNull() + return nil + }) + if err != nil { + return err + } + + out.Type = typedValues.DataType() + out.Buffers[1].WrapBuffer(childIdBldr.finish()) + out.Buffers[2].WrapBuffer(valueOffsetBldr.finish()) + + out.Children = make([]exec.ArraySpan, len(childIndicesBldrs)) + for i, b := range childIndicesBldrs { + arr := b.NewArray() + out.Children[i].TakeOwnership(arr.Data()) + arr.Release() + b.Release() + } + return nil +} + func FilterBinary(ctx *exec.KernelCtx, batch *exec.ExecSpan, out *exec.ExecResult) error { var ( nullSelect = ctx.State.(FilterState).NullSelection @@ -1228,9 +1371,9 @@ func GetVectorSelectionKernels() (filterkernels, takeKernels []SelectionKernelDa filterkernels = []SelectionKernelData{ {In: exec.NewMatchedInput(exec.Primitive()), Exec: PrimitiveFilter}, {In: exec.NewExactInput(arrow.Null), Exec: NullFilter}, - {In: exec.NewIDInput(arrow.DECIMAL128), Exec: FilterExec(FSBImpl, filterExec)}, - {In: exec.NewIDInput(arrow.DECIMAL256), Exec: FilterExec(FSBImpl, filterExec)}, - {In: exec.NewIDInput(arrow.FIXED_SIZE_BINARY), Exec: FilterExec(FSBImpl, filterExec)}, + {In: exec.NewIDInput(arrow.DECIMAL128), Exec: FilterExec(FSBImpl)}, + {In: exec.NewIDInput(arrow.DECIMAL256), Exec: FilterExec(FSBImpl)}, + {In: exec.NewIDInput(arrow.FIXED_SIZE_BINARY), Exec: FilterExec(FSBImpl)}, {In: exec.NewMatchedInput(exec.BinaryLike()), Exec: FilterBinary}, {In: exec.NewMatchedInput(exec.LargeBinaryLike()), Exec: FilterBinary}, } @@ -1238,11 +1381,11 @@ func GetVectorSelectionKernels() (filterkernels, takeKernels []SelectionKernelDa takeKernels = []SelectionKernelData{ {In: exec.NewExactInput(arrow.Null), Exec: NullTake}, {In: exec.NewMatchedInput(exec.Primitive()), Exec: PrimitiveTake}, - {In: exec.NewIDInput(arrow.DECIMAL128), Exec: TakeExec(FSBImpl, takeExec)}, - {In: exec.NewIDInput(arrow.DECIMAL256), Exec: TakeExec(FSBImpl, takeExec)}, - {In: exec.NewIDInput(arrow.FIXED_SIZE_BINARY), Exec: TakeExec(FSBImpl, takeExec)}, - {In: exec.NewMatchedInput(exec.BinaryLike()), Exec: TakeExec(VarBinaryImpl[int32], takeExec)}, - {In: exec.NewMatchedInput(exec.LargeBinaryLike()), Exec: TakeExec(VarBinaryImpl[int64], takeExec)}, + {In: exec.NewIDInput(arrow.DECIMAL128), Exec: TakeExec(FSBImpl)}, + {In: exec.NewIDInput(arrow.DECIMAL256), Exec: TakeExec(FSBImpl)}, + {In: exec.NewIDInput(arrow.FIXED_SIZE_BINARY), Exec: TakeExec(FSBImpl)}, + {In: exec.NewMatchedInput(exec.BinaryLike()), Exec: TakeExec(VarBinaryImpl[int32])}, + {In: exec.NewMatchedInput(exec.LargeBinaryLike()), Exec: TakeExec(VarBinaryImpl[int64])}, } return } diff --git a/go/arrow/compute/selection.go b/go/arrow/compute/selection.go index c2e78fc48c7b9..88d3daa74ef3b 100644 --- a/go/arrow/compute/selection.go +++ b/go/arrow/compute/selection.go @@ -21,8 +21,10 @@ import ( "fmt" "github.com/apache/arrow/go/v10/arrow" + "github.com/apache/arrow/go/v10/arrow/array" "github.com/apache/arrow/go/v10/arrow/compute/internal/exec" "github.com/apache/arrow/go/v10/arrow/compute/internal/kernels" + "golang.org/x/sync/errgroup" ) var ( @@ -64,8 +66,8 @@ var ( }) ) -func Take(ctx context.Context, opts *TakeOptions, values, indices Datum) (Datum, error) { - return CallFunction(ctx, "array_take", opts, values, indices) +func Take(ctx context.Context, opts TakeOptions, values, indices Datum) (Datum, error) { + return CallFunction(ctx, "array_take", &opts, values, indices) } func TakeArray(ctx context.Context, values, indices arrow.Array) (arrow.Array, error) { @@ -83,6 +85,82 @@ func TakeArray(ctx context.Context, values, indices arrow.Array) (arrow.Array, e return out.(*ArrayDatum).MakeArray(), nil } +func TakeArrayOpts(ctx context.Context, values, indices arrow.Array, opts TakeOptions) (arrow.Array, error) { + v := NewDatum(values) + idx := NewDatum(indices) + defer v.Release() + defer idx.Release() + + out, err := CallFunction(ctx, "array_take", &opts, v, idx) + if err != nil { + return nil, err + } + defer out.Release() + + return out.(*ArrayDatum).MakeArray(), nil +} + +type listArr interface { + arrow.Array + ListValues() arrow.Array +} + +func takeListImpl(fn exec.ArrayKernelExec) exec.ArrayKernelExec { + return func(ctx *exec.KernelCtx, batch *exec.ExecSpan, out *exec.ExecResult) error { + if err := fn(ctx, batch, out); err != nil { + return err + } + + // out.Children[0] contains the child indexes of values that we + // want to take after processing. + values := batch.Values[0].Array.MakeArray().(listArr) + defer values.Release() + + childIndices := out.Children[0].MakeArray() + defer childIndices.Release() + + takenChild, err := TakeArrayOpts(ctx.Ctx, values.ListValues(), childIndices, kernels.TakeOptions{BoundsCheck: false}) + if err != nil { + return err + } + defer takenChild.Release() + + out.Children[0].TakeOwnership(takenChild.Data()) + return nil + } +} + +func denseUnionImpl(ctx *exec.KernelCtx, batch *exec.ExecSpan, out *exec.ExecResult) error { + ex := kernels.TakeExec(kernels.DenseUnionImpl) + if err := ex(ctx, batch, out); err != nil { + return err + } + + typedValues := batch.Values[0].Array.MakeArray().(*array.DenseUnion) + defer typedValues.Release() + + eg, cctx := errgroup.WithContext(ctx.Ctx) + eg.SetLimit(GetExecCtx(ctx.Ctx).NP) + + for i := 0; i < typedValues.NumFields(); i++ { + i := i + eg.Go(func() error { + arr := typedValues.Field(i) + childIndices := out.Children[i].MakeArray() + defer childIndices.Release() + taken, err := TakeArrayOpts(cctx, arr, childIndices, kernels.TakeOptions{}) + if err != nil { + return err + } + defer taken.Release() + out.Children[i].TakeOwnership(taken.Data()) + return nil + }) + } + + return eg.Wait() +} + // RegisterVectorSelection registers functions that select specific // values from arrays such as Take and Filter func RegisterVectorSelection(reg FunctionRegistry) { @@ -92,6 +170,13 @@ func RegisterVectorSelection(reg FunctionRegistry) { reg.AddFunction(takeMetaFunc, false) filterKernels, takeKernels := kernels.GetVectorSelectionKernels() + takeKernels = append(takeKernels, []kernels.SelectionKernelData{ + {In: exec.NewIDInput(arrow.LIST), Exec: takeListImpl(kernels.TakeExec(kernels.ListImpl[int32]))}, + {In: exec.NewIDInput(arrow.LARGE_LIST), Exec: takeListImpl(kernels.TakeExec(kernels.ListImpl[int64]))}, + {In: exec.NewIDInput(arrow.FIXED_SIZE_LIST), Exec: takeListImpl(kernels.TakeExec(kernels.FSLImpl))}, + {In: exec.NewIDInput(arrow.DENSE_UNION), Exec: denseUnionImpl}, + }...) + vfunc := NewVectorFunction("array_filter", Binary(), EmptyFuncDoc) vfunc.defaultOpts = &kernels.FilterOptions{} @@ -118,6 +203,7 @@ func RegisterVectorSelection(reg FunctionRegistry) { InputTypes: []exec.InputType{kd.In, selectionType}, OutType: kernels.OutputFirstType, } + basekernel.ExecFn = kd.Exec vfunc.AddKernel(basekernel) } diff --git a/go/arrow/compute/vector_selection_test.go b/go/arrow/compute/vector_selection_test.go index e5fdfbcb77680..9e23896fe4ab6 100644 --- a/go/arrow/compute/vector_selection_test.go +++ b/go/arrow/compute/vector_selection_test.go @@ -710,6 +710,121 @@ func (tk *TakeKernelTestString) TestTakeString() { }) } +type TakeKernelLists struct { + TakeKernelTestTyped +} + +func (tk *TakeKernelLists) TestListInt32() { + tk.dt = arrow.ListOf(arrow.PrimitiveTypes.Int32) + + listJSON := `[[], [1, 2], null, [3]]` + tk.checkTake(tk.dt, listJSON, `[]`, `[]`) + tk.checkTake(tk.dt, listJSON, `[3, 2, 1]`, `[[3], null, [1,2]]`) + tk.checkTake(tk.dt, listJSON, `[null, 3, 0]`, `[null, [3], []]`) + tk.checkTake(tk.dt, listJSON, `[null, null]`, `[null, null]`) + tk.checkTake(tk.dt, listJSON, `[3, 0, 0, 3]`, `[[3], [], [], [3]]`) + tk.checkTake(tk.dt, listJSON, `[0, 1, 2, 3]`, listJSON) + tk.checkTake(tk.dt, listJSON, `[0, 0, 0, 0, 0, 0, 1]`, `[[], [], [], [], [], [], [1, 2]]`) + + tk.assertNoValidityBitmapUnknownNullCountJSON(tk.dt, `[[], [1, 2], [3]]`, `[0, 1, 0]`) +} + +func (tk *TakeKernelLists) TestListListInt32() { + tk.dt = arrow.ListOf(arrow.ListOf(arrow.PrimitiveTypes.Int32)) + + listJSON := `[ + [], + [[1], [2, null, 2], []], + null, + [[3, null], null] + ]` + tk.checkTake(tk.dt, listJSON, `[]`, `[]`) + tk.checkTake(tk.dt, listJSON, `[3, 2, 1]`, `[ + [[3, null], null], + null, + [[1], [2, null, 2], []] + ]`) + tk.checkTake(tk.dt, listJSON, `[null, 3, 0]`, `[ + null, + [[3, null], null], + [] + ]`) + tk.checkTake(tk.dt, listJSON, `[null, null]`, `[null, null]`) + tk.checkTake(tk.dt, listJSON, `[3, 0, 0, 3]`, `[[[3, null], null], [], [], [[3, null], null]]`) + tk.checkTake(tk.dt, listJSON, `[0, 1, 2, 3]`, listJSON) + tk.checkTake(tk.dt, listJSON, `[0, 0, 0, 0, 0, 0, 1]`, + `[[], [], [], [], [], [], [[1], [2, null, 2], []]]`) + + tk.assertNoValidityBitmapUnknownNullCountJSON(tk.dt, `[[[1], [2, null, 2], []], [[3, null]]]`, `[0, 1, 0]`) +} + +func (tk *TakeKernelLists) TestLargeListInt32() { + tk.dt = arrow.LargeListOf(arrow.PrimitiveTypes.Int32) + listJSON := `[[], [1, 2], null, [3]]` + tk.checkTake(tk.dt, listJSON, `[]`, `[]`) + tk.checkTake(tk.dt, listJSON, `[null, 1, 2, 0]`, `[null, [1, 2], null, []]`) +} + +func (tk *TakeKernelLists) TestFixedSizeListInt32() { + tk.dt = arrow.FixedSizeListOf(3, arrow.PrimitiveTypes.Int32) + listJSON := `[null, [1, null, 3], [4, 5, 6], [7, 8, null]]` + tk.checkTake(tk.dt, listJSON, `[]`, `[]`) + tk.checkTake(tk.dt, listJSON, `[3, 2, 1]`, `[[7, 8, null], [4, 5, 6], [1, null, 3]]`) + tk.checkTake(tk.dt, listJSON, `[null, 2, 0]`, `[null, [4, 5, 6], null]`) + tk.checkTake(tk.dt, listJSON, `[null, null]`, `[null, null]`) + tk.checkTake(tk.dt, listJSON, `[3, 0, 0, 3]`, `[[7, 8, null], null, null, [7, 8, null]]`) + tk.checkTake(tk.dt, listJSON, `[0, 1, 2, 3]`, listJSON) + tk.checkTake(tk.dt, listJSON, `[2, 2, 2, 2, 2, 2, 1]`, + `[[4, 5, 6], [4, 5, 6], [4, 5, 6], [4, 5, 6], [4, 5, 6], [4, 5, 6], [1, null, 3]]`) + + tk.assertNoValidityBitmapUnknownNullCountJSON(tk.dt, `[[1, null, 3], [4, 5, 6], [7, 8, null]]`, `[0, 1, 0]`) +} + +type TakeKernelDenseUnion struct { + TakeKernelTestTyped +} + +func (tk *TakeKernelDenseUnion) TestTakeUnion() { + tk.dt = arrow.DenseUnionOf([]arrow.Field{ + {Name: "a", Type: arrow.PrimitiveTypes.Int32, Nullable: true}, + {Name: "b", Type: arrow.BinaryTypes.String, Nullable: true}, + }, []arrow.UnionTypeCode{2, 5}) + + unionJSON := `[ + [2, null], + [2, 222], + [5, "hello"], + [5, "eh"], + [2, null], + [2, 111], + [5, null] + ]` + tk.checkTake(tk.dt, unionJSON, `[]`, `[]`) + tk.checkTake(tk.dt, unionJSON, `[3, 1, 3, 1, 3]`, `[ + [5, "eh"], + [2, 222], + [5, "eh"], + [2, 222], + [5, "eh"] + ]`) + tk.checkTake(tk.dt, unionJSON, `[4, 2, 1, 6]`, `[ + [2, null], + [5, "hello"], + [2, 222], + [5, null] + ]`) + tk.checkTake(tk.dt, unionJSON, `[0, 1, 2, 3, 4, 5, 6]`, unionJSON) + tk.checkTake(tk.dt, unionJSON, `[0, 2, 2, 2, 2, 2, 2]`, `[ + [2, null], + [5, "hello"], + [5, "hello"], + [5, "hello"], + [5, "hello"], + [5, "hello"], + [5, "hello"] + ]`) +} + func TestTakeKernels(t *testing.T) { suite.Run(t, new(TakeKernelTest)) for _, dt := range numericTypes { @@ -719,6 +834,8 @@ func TestTakeKernels(t *testing.T) { for _, dt := range baseBinaryTypes { suite.Run(t, &TakeKernelTestString{TakeKernelTestTyped: TakeKernelTestTyped{dt: dt}}) } + suite.Run(t, new(TakeKernelLists)) + suite.Run(t, new(TakeKernelDenseUnion)) } func TestFilterKernels(t *testing.T) {