From f31b7ea91db5e560b6207b6efcba52eddfd4c7ce Mon Sep 17 00:00:00 2001 From: Mikhail Beck Date: Fri, 27 Sep 2024 13:14:21 +0100 Subject: [PATCH] #252 Using the pytest plugins (#262) * #252 Using the pytest plugins * #252 Using the pytest plugins * #252 Using the pytest plugins * #252 Using the pytest plugins * [CodeBuild] * #252 Updated dependencies * [CodeBuild] * #252 Fixed language_container_factory * [CodeBuild] * #252 Fixed the slc fixture name [CodeBuild] * #252 Fixed some tests [CodeBuild] * #252 Set proper dependencies [CodeBuild] * #252 Added a unit test for the language_container.py [CodeBuild] --- doc/changes/changes_2.1.0.md | 2 + .../deployment/language_container.py | 116 +-- language_container/exaslct | 1 - .../construct_docker_runner_image_name.sh | 11 - language_container/exaslct_scripts/exaslct.sh | 25 - .../exaslct_install_template.sh | 25 - .../exaslct_within_docker_container.sh | 133 --- .../exaslct_within_docker_container_slim.sh | 80 -- ...ocker_container_without_container_build.sh | 40 - .../exaslct_scripts/mount_point_parsing.sh | 140 --- .../flavor_base/build_steps.py | 26 - .../flavor_base/dependencies/.gitignore | 1 - .../flavor_base/dependencies/Dockerfile | 5 - .../flavor_base/language_definition | 1 - .../flavor_base/release/.gitignore | 1 - .../flavor_base/release/Dockerfile | 8 - .../install_or_update_exaslct.sh | 61 -- noxfile.py | 25 +- poetry.lock | 973 ++++++++++-------- pyproject.toml | 9 +- tests/conftest.py | 17 - tests/fixtures/bucketfs_fixture.py | 52 +- tests/fixtures/database_connection_fixture.py | 126 --- .../database_connection_fixture_constants.py | 4 - tests/fixtures/language_container_fixture.py | 70 +- .../language_container_fixture_constants.py | 2 - tests/fixtures/script_deployment_fixture.py | 87 +- tests/fixtures/setup_database_fixture.py | 98 +- .../deployment/test_scripts_deployer.py | 18 +- .../deployment/test_scripts_deployer_cli.py | 15 +- .../with_db/test_upload_model.py | 4 +- .../without_db/test_slc_size.py | 9 - .../deployment/test_language_container.py | 20 + tests/utils/parameters.py | 14 +- 34 files changed, 669 insertions(+), 1550 deletions(-) delete mode 120000 language_container/exaslct delete mode 100644 language_container/exaslct_scripts/construct_docker_runner_image_name.sh delete mode 100755 language_container/exaslct_scripts/exaslct.sh delete mode 100644 language_container/exaslct_scripts/exaslct_install_template.sh delete mode 100644 language_container/exaslct_scripts/exaslct_within_docker_container.sh delete mode 100644 language_container/exaslct_scripts/exaslct_within_docker_container_slim.sh delete mode 100644 language_container/exaslct_scripts/exaslct_within_docker_container_without_container_build.sh delete mode 100644 language_container/exaslct_scripts/mount_point_parsing.sh delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/build_steps.py delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/dependencies/.gitignore delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/dependencies/Dockerfile delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/language_definition delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/release/.gitignore delete mode 100644 language_container/exasol_transformers_extension_container/flavor_base/release/Dockerfile delete mode 100644 language_container/install_or_update_exaslct.sh delete mode 100644 tests/fixtures/database_connection_fixture.py delete mode 100644 tests/fixtures/database_connection_fixture_constants.py delete mode 100644 tests/fixtures/language_container_fixture_constants.py delete mode 100644 tests/integration_tests/without_db/test_slc_size.py create mode 100644 tests/unit_tests/deployment/test_language_container.py diff --git a/doc/changes/changes_2.1.0.md b/doc/changes/changes_2.1.0.md index 5bc0f848..2b704da7 100644 --- a/doc/changes/changes_2.1.0.md +++ b/doc/changes/changes_2.1.0.md @@ -19,6 +19,8 @@ n/a ### Refactorings +- #252: Use the pytest plugins for in the integration tests. + n/a ### Security diff --git a/exasol_transformers_extension/deployment/language_container.py b/exasol_transformers_extension/deployment/language_container.py index 6b18f53f..2caa9baa 100644 --- a/exasol_transformers_extension/deployment/language_container.py +++ b/exasol_transformers_extension/deployment/language_container.py @@ -1,105 +1,27 @@ -import shutil -import subprocess -from pathlib import Path -from typing import Dict, Optional +from contextlib import contextmanager +import re -from exasol_integration_test_docker_environment.lib.docker.images.image_info import ImageInfo -from exasol_script_languages_container_tool.lib import api -from exasol_script_languages_container_tool.lib.tasks.export.export_containers import ExportContainerResult - - -def find_file_or_folder_backwards(name: str) -> Path: - current_path = Path(__file__).parent - result_path = None - while current_path != current_path.root: - result_path = Path(current_path, name) - if result_path.exists(): - break - current_path = current_path.parent - if result_path is not None and result_path.exists(): - return result_path - else: - raise RuntimeError(f"Could not find {name} when searching backwards from {Path(__file__).parent}") +from exasol.python_extension_common.deployment.language_container_builder import ( + LanguageContainerBuilder, find_path_backwards, exclude_cuda) CONTAINER_NAME = "exasol_transformers_extension_container" -def find_flavor_path() -> Path: - language_container_path = find_file_or_folder_backwards("language_container") - flavor_path = language_container_path / CONTAINER_NAME - return flavor_path - - -def build_language_container(flavor_path: Path) -> Dict[str, ImageInfo]: - image_infos = api.build(flavor_path=(str(flavor_path),), goal=("release",)) - return image_infos - - -def export(flavor_path: Path, - export_path: Optional[Path] = None) -> ExportContainerResult: - if export_path is not None: - export_path = str(export_path) - export_result = api.export(flavor_path=(str(flavor_path),), export_path=export_path) - return export_result - - -def upload( - flavor_path: Path, - bucketfs_name: str, - bucket_name: str, - database_host: str, - bucketfs_port: int, - user: str, - password: str, - path_in_bucket: str, - release_name: str -): - api.upload( - flavor_path=(str(flavor_path),), - bucketfs_name=bucketfs_name, - bucket_name=bucket_name, - bucketfs_port=bucketfs_port, - database_host=database_host, - bucketfs_username=user, - bucketfs_password=password, - path_in_bucket=path_in_bucket, - release_name=release_name - ) - - -def prepare_flavor(flavor_path: Path): - flavor_base_path = flavor_path / "flavor_base" - add_requirements_to_flavor(flavor_base_path) - add_wheel_to_flavor(flavor_base_path) - - -def find_project_directory(): - project_directory = find_file_or_folder_backwards("pyproject.toml").parent - return project_directory - - -def add_wheel_to_flavor(flavor_base_path): - project_directory = find_project_directory() - subprocess.call(["poetry", "build"], cwd=project_directory) - dist_path = project_directory / "dist" - wheels = list(dist_path.glob("*.whl")) - if len(wheels) != 1: - raise RuntimeError(f"Did not find exactly one wheel file in dist directory {dist_path}. " - f"Found the following wheels: {wheels}") - wheel = wheels[0] - wheel_target = flavor_base_path / "release" / "dist" - wheel_target.mkdir(parents=True, exist_ok=True) - shutil.copyfile(wheel, wheel_target / wheel.name) +def add_pytorch_to_requirements(container_builder: LanguageContainerBuilder) -> None: + """Modifies the default dependencies/Dockerfile""" + dockerfile_file = 'flavor_base/dependencies/Dockerfile' + dockerfile = container_builder.read_file(dockerfile_file) + install_pattern = r'^\s*(?i:run)\s+python\d.\d+\s+-m\s+pip\s+install\s+-r\s+/project/requirements.txt' + install_extra = '--extra-index-url https://download.pytorch.org/whl/cpu' + dockerfile = re.sub(install_pattern, rf"\g<0> {install_extra}", dockerfile, flags=re.MULTILINE) + container_builder.write_file(dockerfile_file, dockerfile) -def add_requirements_to_flavor(flavor_base_path: Path): - project_directory = find_project_directory() - requirements_bytes = subprocess.check_output(["poetry", "export", "--without-hashes", "--without-urls"], - cwd=project_directory) - requirements = requirements_bytes.decode("UTF-8") - requirements_without_cuda = "\n".join(line - for line in requirements.splitlines() - if not line.startswith("nvidia")) - requirements_file = flavor_base_path / "dependencies" / "requirements.txt" - requirements_file.write_text(requirements_without_cuda) +@contextmanager +def language_container_factory(): + with LanguageContainerBuilder(CONTAINER_NAME) as container_builder: + add_pytorch_to_requirements(container_builder) + project_directory = find_path_backwards("pyproject.toml", __file__).parent + container_builder.prepare_flavor(project_directory, requirement_filter=exclude_cuda) + yield container_builder diff --git a/language_container/exaslct b/language_container/exaslct deleted file mode 120000 index 68d09557..00000000 --- a/language_container/exaslct +++ /dev/null @@ -1 +0,0 @@ -exaslct_scripts/exaslct.sh \ No newline at end of file diff --git a/language_container/exaslct_scripts/construct_docker_runner_image_name.sh b/language_container/exaslct_scripts/construct_docker_runner_image_name.sh deleted file mode 100644 index 737ddd18..00000000 --- a/language_container/exaslct_scripts/construct_docker_runner_image_name.sh +++ /dev/null @@ -1,11 +0,0 @@ -#!/usr/bin/env bash - -set -euo pipefail - -if [ -z "${1-}" ]; then - VERSION="$(git rev-parse HEAD 2>/dev/null || echo latest)" -else - VERSION="$1" -fi - -echo "exasol/script-language-container:container-tool-runner-$VERSION" diff --git a/language_container/exaslct_scripts/exaslct.sh b/language_container/exaslct_scripts/exaslct.sh deleted file mode 100755 index 33be2f8e..00000000 --- a/language_container/exaslct_scripts/exaslct.sh +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/env bash - -##################################################################################### -###REMEMBER TO TEST ANY CHANGES HERE ON MACOSX!!! -##################################################################################### - -set -euo pipefail - -rl=readlink -if [[ "$(uname)" = Darwin ]]; then - rl=greadlink -fi - -if [[ ! "$(command -v $rl)" ]]; then - echo readlink not available! Please install coreutils: On Linux \"apt-get install coreutils\" or similar. On MacOsX \"brew install coreutils\". - exit 1 -fi - -SCRIPT_DIR="$(dirname "$($rl -f "${BASH_SOURCE[0]}")")" - -EXASLCT_GIT_REF="0.14.0" -RUNNER_IMAGE_NAME="$(bash "$SCRIPT_DIR/construct_docker_runner_image_name.sh" "$EXASLCT_GIT_REF")" - -bash "$SCRIPT_DIR/exaslct_within_docker_container_without_container_build.sh" "$RUNNER_IMAGE_NAME" "${@}" - diff --git a/language_container/exaslct_scripts/exaslct_install_template.sh b/language_container/exaslct_scripts/exaslct_install_template.sh deleted file mode 100644 index 3995a0f2..00000000 --- a/language_container/exaslct_scripts/exaslct_install_template.sh +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/env bash - -##################################################################################### -###REMEMBER TO TEST ANY CHANGES HERE ON MACOSX!!! -##################################################################################### - -set -euo pipefail - -rl=readlink -if [[ "$(uname)" = Darwin ]]; then - rl=greadlink -fi - -if [[ ! "$(command -v $rl)" ]]; then - echo readlink not available! Please install coreutils: On Linux \"apt-get install coreutils\" or similar. On MacOsX \"brew install coreutils\". - exit 1 -fi - -SCRIPT_DIR="$(dirname "$($rl -f "${BASH_SOURCE[0]}")")" - -EXASLCT_GIT_REF="<<<>>>" -RUNNER_IMAGE_NAME="$(bash "$SCRIPT_DIR/construct_docker_runner_image_name.sh" "$EXASLCT_GIT_REF")" - -bash "$SCRIPT_DIR/exaslct_within_docker_container_without_container_build.sh" "$RUNNER_IMAGE_NAME" "${@}" - diff --git a/language_container/exaslct_scripts/exaslct_within_docker_container.sh b/language_container/exaslct_scripts/exaslct_within_docker_container.sh deleted file mode 100644 index 0452cc63..00000000 --- a/language_container/exaslct_scripts/exaslct_within_docker_container.sh +++ /dev/null @@ -1,133 +0,0 @@ -#!/usr/bin/env bash - -##################################################################################### -###REMEMBER TO KEEP THIS FILE IN SYNC WITH exaslct_within_docker_container_slim.sh!!! -##################################################################################### - -#set -e => immediately exit if any command [1] has a non-zero exit status -#set -u => reference to any variable you haven't previously defined is an error and causes the program to immediately exit. -#set -o pipefailt => This setting prevents errors in a pipeline from being masked. -# If any command in a pipeline fails, -# that return code will be used as the return code of the whole pipeline. -set -euo pipefail - -RUNNER_IMAGE_NAME="$1" -shift 1 - -if [[ -t 1 ]]; then - terminal_parameter=-it -else - terminal_parameter="" -fi - -SCRIPT_DIR="$(dirname "$(readlink -f "${BASH_SOURCE[0]}")")" - -# shellcheck source=exasol_script_languages_container_tool/starter_scripts/mount_point_parsing.sh -source "$SCRIPT_DIR"/mount_point_parsing.sh -get_mount_point_paths "${@}" - -quoted_arguments='' -for argument in "${@}"; do - argument="${argument//\\/\\\\}" - quoted_arguments="$quoted_arguments \"${argument//\"/\\\"}\"" -done - -#After finalizing docker run we need to change owner (current user) of all directories which were mounted again -#For that we call chown with a list of the respective directories -#In order to avoid syntax errors we need to encapsulate all those directories with quotes here -chown_directories='' -for mount_point in "${mount_point_paths[@]}"; do - if [[ -n "${mount_point}" ]]; then - mount_point="${mount_point//\\/\\\\}" - chown_directories="$chown_directories \"${mount_point//\"/\\\"}\"" - fi -done - -chown_directories_cmd='' -if [[ -n "$chown_directories" ]]; then - chown_directories_cmd="chown -R $(id -u):$(id -g) $chown_directories;" -fi - -BASH_MAJOR_VERSION=$(echo "${BASH_VERSION}" | cut -f1 -d".") -BASH_MINOR_VERSION=$(echo "${BASH_VERSION}" | cut -f2 -d".") - -#For all mount pounts (directories in argument list) we need -# 1. For the host argument: Resolve relative paths and resolve symbolic links -# 2. For the container argument: Resolve relative paths, but keep symbolic links -if [[ $BASH_MAJOR_VERSION -lt 5 ]] && [[ $BASH_MINOR_VERSION -lt 4 ]]; then - echo "Bash version smaller than 4.4 detected, going to us legacy method for generating mount points. This method doesn't support paths with spaces." - # This workaround is necassary because bash arrays are broken in older bash versions - mount_point_parameter='' - space_pattern=" " - for mount_point in "${mount_point_paths[@]}"; do - if [[ -n "${mount_point}" ]]; then - if [[ $mount_point =~ $space_pattern ]]; then - echo "Found space in '$mount_point'. Aborting." - exit 1 - fi - host_dir_name=$(readlink -f "${mount_point}") - container_dir_name=$(realpath -s "${mount_point}") - mount_point_parameter="$mount_point_parameter-v ${host_dir_name}:${container_dir_name} " - fi - done -else - declare -a mount_point_parameter - for mount_point in "${mount_point_paths[@]}"; do - if [[ -n "${mount_point}" ]]; then - host_dir_name=$(readlink -f "${mount_point}") - container_dir_name=$(realpath -s "${mount_point}") - mount_point_parameter+=("-v") - mount_point_parameter+=("${host_dir_name}:${container_dir_name}") - fi - done -fi - - -# Still need to "CHOWN" .build_output -# because it is a default value for --output-path, and hence might not be part of $chown_directories -RUN_COMMAND="/docker_runner/exaslct_without_poetry.sh $quoted_arguments; RETURN_CODE=\$?; $chown_directories_cmd chown -R $(id -u):$(id -g) .build_output &> /dev/null; exit \$RETURN_CODE" - -HOST_DOCKER_SOCKER_PATH="/var/run/docker.sock" -CONTAINER_DOCKER_SOCKER_PATH="/var/run/docker.sock" -DOCKER_SOCKET_MOUNT="$HOST_DOCKER_SOCKER_PATH:$CONTAINER_DOCKER_SOCKER_PATH" - -function create_env_file() { - touch "$tmpfile_env" - chmod 600 "$tmpfile_env" - if [ -n "${TARGET_DOCKER_PASSWORD-}" ]; then - echo "TARGET_DOCKER_PASSWORD=$TARGET_DOCKER_PASSWORD" >> "$tmpfile_env" - fi - if [ -n "${SOURCE_DOCKER_PASSWORD-}" ]; then - echo "SOURCE_DOCKER_PASSWORD=$SOURCE_DOCKER_PASSWORD" >> "$tmpfile_env" - fi - chmod a-w "$tmpfile_env" -} - -function create_env_file_debug_protected() { - shell_options="$-" - case $shell_options in - *x*) set +x ;; - *) echo &>/dev/null ;; - esac - - create_env_file "$1" - - case $shell_options in - *x*) set -x ;; - *) echo &>/dev/null ;; - esac -} - -tmpfile_env=$(mktemp) -trap 'rm -f -- "$tmpfile_env"' INT TERM HUP EXIT - -create_env_file_debug_protected "$tmpfile_env" -if [[ $BASH_MAJOR_VERSION -lt 5 ]] && [[ $BASH_MINOR_VERSION -lt 4 ]]; then - # Ignore shellcheck rule as we need to split elements of array by space (they are in form "-v %MOUNT_POINT"), futher we want $terminal_parameter as is - # shellcheck disable=SC2068,SC2086 - docker run --network host --env-file "$tmpfile_env" --rm $terminal_parameter -v "$PWD:$PWD" -v "$DOCKER_SOCKET_MOUNT" -w "$PWD" ${mount_point_parameter[@]} "$RUNNER_IMAGE_NAME" bash -c "$RUN_COMMAND" -else - # Ignore shellcheck rule because we want to $terminal_parameter as is - # shellcheck disable=SC2086 - docker run --network host --env-file "$tmpfile_env" --rm $terminal_parameter -v "$PWD:$PWD" -v "$DOCKER_SOCKET_MOUNT" -w "$PWD" "${mount_point_parameter[@]}" "$RUNNER_IMAGE_NAME" bash -c "$RUN_COMMAND" -fi diff --git a/language_container/exaslct_scripts/exaslct_within_docker_container_slim.sh b/language_container/exaslct_scripts/exaslct_within_docker_container_slim.sh deleted file mode 100644 index 9eaf3666..00000000 --- a/language_container/exaslct_scripts/exaslct_within_docker_container_slim.sh +++ /dev/null @@ -1,80 +0,0 @@ -#!/usr/bin/env bash - -#set -e => immediately exit if any command [1] has a non-zero exit status -#set -u => reference to any variable you haven't previously defined is an error and causes the program to immediately exit. -#set -o pipefailt => This setting prevents errors in a pipeline from being masked. -# If any command in a pipeline fails, -# that return code will be used as the return code of the whole pipeline. -set -euo pipefail - - -RUNNER_IMAGE_NAME="$1" -shift 1 - -if [[ -t 1 ]]; then - terminal_parameter=-it -else - terminal_parameter="" -fi - -RED='\033[0;31m' -#Ignore shellcheck rule, as using printf does not change the color in the terminal. -#shellcheck disable=SC2059 -printf "${RED} Using slim version of exaslct. Please note that all input/output arguments (input flavor directories, output, log, etc.) needs to point to directories within the current directory.\n" - -rl=readlink -if [[ "$(uname)" = Darwin ]]; then - rl=greadlink -fi - -if [[ ! "$(command -v $rl)" ]]; then - echo readlink not available! Please install coreutils: On Linux \"apt-get install coreutils\" or similar. On MacOsX \"brew install coreutils\". - exit 1 -fi - -quoted_arguments='' -for argument in "${@}"; do - argument="${argument//\\/\\\\}" - quoted_arguments="$quoted_arguments \"${argument//\"/\\\"}\"" -done - -RUN_COMMAND="/docker_runner/exaslct_without_poetry.sh $quoted_arguments; RETURN_CODE=\$?; chown -R $(id -u):$(id -g) .build_output &> /dev/null; exit \$RETURN_CODE" - -HOST_DOCKER_SOCKER_PATH="/var/run/docker.sock" -CONTAINER_DOCKER_SOCKER_PATH="/var/run/docker.sock" -DOCKER_SOCKET_MOUNT="$HOST_DOCKER_SOCKER_PATH:$CONTAINER_DOCKER_SOCKER_PATH" - -function create_env_file() { - touch "$tmpfile_env" - chmod 600 "$tmpfile_env" - if [ -n "${TARGET_DOCKER_PASSWORD-}" ]; then - echo "TARGET_DOCKER_PASSWORD=$TARGET_DOCKER_PASSWORD" >> "$tmpfile_env" - fi - if [ -n "${SOURCE_DOCKER_PASSWORD-}" ]; then - echo "SOURCE_DOCKER_PASSWORD=$SOURCE_DOCKER_PASSWORD" >> "$tmpfile_env" - fi - chmod a-w "$tmpfile_env" -} - -function create_env_file_debug_protected() { - shell_options="$-" - case $shell_options in - *x*) set +x ;; - *) echo &>/dev/null ;; - esac - - create_env_file "$1" - - case $shell_options in - *x*) set -x ;; - *) echo &>/dev/null ;; - esac -} - -tmpfile_env=$(mktemp) -trap 'rm -f -- "$tmpfile_env"' INT TERM HUP EXIT - -create_env_file_debug_protected "$tmpfile_env" -# Ignore shellcheck rule because we want to $terminal_parameter as is -# shellcheck disable=SC2086 -docker run --network host --env-file "$tmpfile_env" --rm $terminal_parameter -v "$PWD:$PWD" -v "$DOCKER_SOCKET_MOUNT" -w "$PWD" "$RUNNER_IMAGE_NAME" bash -c "$RUN_COMMAND" diff --git a/language_container/exaslct_scripts/exaslct_within_docker_container_without_container_build.sh b/language_container/exaslct_scripts/exaslct_within_docker_container_without_container_build.sh deleted file mode 100644 index 86c2d3cb..00000000 --- a/language_container/exaslct_scripts/exaslct_within_docker_container_without_container_build.sh +++ /dev/null @@ -1,40 +0,0 @@ -#!/usr/bin/env bash - -##################################################################################### -###REMEMBER TO TEST ANY CHANGES HERE ON MACOSX!!! -##################################################################################### - - -set -euo pipefail - -rl=readlink -if [[ "$(uname)" = Darwin ]]; then - rl=greadlink -fi - -if [[ ! "$(command -v $rl)" ]]; then - echo readlink not available! Please install coreutils: On Linux \"apt-get install coreutils\" or similar. On MacOsX \"brew install coreutils\". - exit 1 -fi - -SCRIPT_DIR="$(dirname "$($rl -f "${BASH_SOURCE[0]}")")" - - -RUNNER_IMAGE_NAME="$1" -shift 1 - -FIND_IMAGE_LOCALLY=$(docker images -q "$RUNNER_IMAGE_NAME") -if [ -z "$FIND_IMAGE_LOCALLY" ]; then - docker pull "$RUNNER_IMAGE_NAME" -fi - -BASH_MAJOR_VERSION=$(echo "${BASH_VERSION}" | cut -f1 -d".") - -EXEC_SCRIPT=exaslct_within_docker_container.sh -# Bash versions before 4.0 didn't support associative arrays which are used in mount_point_parsing.sh. https://tldp.org/LDP/abs/html/bashver4.html -# MaxOSX uses per default Bash version 3.*. -if [[ "$(uname)" = Darwin ]] || [[ $BASH_MAJOR_VERSION -lt 4 ]]; then - EXEC_SCRIPT=exaslct_within_docker_container_slim.sh -fi - -bash "$SCRIPT_DIR/$EXEC_SCRIPT" "$RUNNER_IMAGE_NAME" "${@}" diff --git a/language_container/exaslct_scripts/mount_point_parsing.sh b/language_container/exaslct_scripts/mount_point_parsing.sh deleted file mode 100644 index 7fc9a3f3..00000000 --- a/language_container/exaslct_scripts/mount_point_parsing.sh +++ /dev/null @@ -1,140 +0,0 @@ -#!/usr/bin/env bash - -#set -e => immediately exit if any command [1] has a non-zero exit status -#set -u => reference to any variable you haven't previously defined is an error and causes the program to immediately exit. -#set -o pipefailt => This setting prevents errors in a pipeline from being masked. -# If any command in a pipeline fails, -# that return code will be used as the return code of the whole pipeline. -set -euo pipefail - -declare -A relevant_mount_point_arguments -relevant_mount_point_arguments["--flavor-path"]=in_path -relevant_mount_point_arguments["--export-path"]=out_path -relevant_mount_point_arguments["--output-directory"]=out_path -relevant_mount_point_arguments["--temporary-base-directory"]=out_path -relevant_mount_point_arguments["--cache-directory"]=in_path -relevant_mount_point_arguments["--save-directory"]=out_path -relevant_mount_point_arguments["--task-dependencies-dot-file"]=out_file -#relevant_mount_point_arguments["--test-folder"]=in_path # TODO reactive in #37 -#relevant_mount_point_arguments["--test-file"]=in_file # TODO reactive in #37 - -function _get_mount_point_path_for_in_dir() { - local current_arg=$1 - local dir_path=$2 - - if [[ -d $dir_path ]]; then - mount_point_paths+=("$dir_path") - else - >&2 echo "Input directory $dir_path for parameter $current_arg does not exist." - exit 1 - fi -} - -function _get_mount_point_path_for_in_file() { - local current_arg=$1 - local file_path=$2 - if [[ -f $file_path ]]; then - local rel_dir_name='' - rel_dir_name="$(dirname "${file_path}")" - mount_point_paths+=("$rel_dir_name") - else - >&2 echo "Input file $file_path for parameter $current_arg does not exist." - exit 1 - fi -} - -function _get_mount_point_path_for_out_path() { - local dir_path=$1 - #Create out directories if necessary - if [[ ! -d $dir_path ]]; then - mkdir -p "$dir_path" - fi - mount_point_paths+=("$dir_path") -} - -function _get_mount_point_path_for_out_file() { - local file_path=$1 - local rel_dir_name='' - rel_dir_name="$(dirname "${file_path}")" - #Create out directories if necessary - if [[ ! -d $file_path ]]; then - mkdir -p "$rel_dir_name" - fi - mount_point_paths+=("$rel_dir_name") -} - -function _get_mount_point_path() { - local current_arg=$1 - local next_arg=$2 - local arg_type=$3 - - case $arg_type in - in_path) - _get_mount_point_path_for_in_dir "${current_arg}" "${next_arg}" - ;; - in_file) - _get_mount_point_path_for_in_file "${current_arg}" "${next_arg}" - ;; - out_path) - _get_mount_point_path_for_out_path "${next_arg}" - ;; - out_file) - _get_mount_point_path_for_out_file "${next_arg}" - ;; - *) - >&2 echo "INVALID ARGUMENT. Please adjust variable relevant_mount_point_arguments in $0!" - exit 1 - ;; - esac -} - -function _is_param_relevant_mount_point(){ - param=$1 - for check_param in "${!relevant_mount_point_arguments[@]}"; do - if [[ $param == "${check_param}"=* ]]; then - first_part="$(echo "$param" | cut -d= -f 1)" - echo "$first_part" - return 0 - elif [[ "$param" == "${check_param}" ]]; then - echo "$param" - return 0 - fi - done - echo "" - return 0 -} - -function _add_mount_point_paths() { - local lenArgs="$#" - for ((idxArg = 1; idxArg <= lenArgs; idxArg++)); do - current_arg=${!idxArg} - first_part="$(_is_param_relevant_mount_point "$current_arg")" - if [[ -n "$first_part" ]]; then - if [[ "$first_part" == "$current_arg" ]]; then - next_arg_idx=$((idxArg + 1)) - next_arg=${!next_arg_idx} - second_part="$next_arg" - idxArg=$next_arg_idx - else - second_part="$(echo "$current_arg" | cut -d= -f 2-)" - fi - _get_mount_point_path "$first_part" "$second_part" "${relevant_mount_point_arguments[${first_part}]}" - fi - done -} - -function get_mount_point_paths() { - unset mount_point_paths - declare -g -a mount_point_paths - # Ignore shellcheck rule as we want to split parameters by space intentionally - # shellcheck disable=SC2086 - _add_mount_point_paths "${@}" - - #Unfortunately for GNU Bash 4.2 we need to add a dummy empty element to mount_point_paths - mount_point_paths+=("") -} - -function print_mount_point_paths(){ - get_mount_point_paths "${@}" - echo "${mount_point_paths[@]}" -} diff --git a/language_container/exasol_transformers_extension_container/flavor_base/build_steps.py b/language_container/exasol_transformers_extension_container/flavor_base/build_steps.py deleted file mode 100644 index 3169b33d..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/build_steps.py +++ /dev/null @@ -1,26 +0,0 @@ -from pathlib import Path -from typing import Dict - -from exasol_script_languages_container_tool.lib.tasks.build.docker_flavor_image_task import DockerFlavorAnalyzeImageTask - - -class AnalyzeDependencies(DockerFlavorAnalyzeImageTask): - def get_build_step(self) -> str: - return "dependencies" - - def requires_tasks(self): - return {} - - def get_path_in_flavor(self): - return "flavor_base" - -class AnalyzeRelease(DockerFlavorAnalyzeImageTask): - def get_build_step(self) -> str: - return "release" - - def requires_tasks(self): - return {"dependencies": AnalyzeDependencies} - - def get_path_in_flavor(self): - return "flavor_base" - diff --git a/language_container/exasol_transformers_extension_container/flavor_base/dependencies/.gitignore b/language_container/exasol_transformers_extension_container/flavor_base/dependencies/.gitignore deleted file mode 100644 index 4414fc1e..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/dependencies/.gitignore +++ /dev/null @@ -1 +0,0 @@ -requirements.txt diff --git a/language_container/exasol_transformers_extension_container/flavor_base/dependencies/Dockerfile b/language_container/exasol_transformers_extension_container/flavor_base/dependencies/Dockerfile deleted file mode 100644 index 8646b7f8..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/dependencies/Dockerfile +++ /dev/null @@ -1,5 +0,0 @@ -FROM exasol/script-language-container:template-Exasol-all-python-3.10-release_BFRSH344TDRPT7LK2FBOJK4KBIDW6A253FFPYEUYT4O2ERFMTCNA - -Run mkdir /project -COPY dependencies/requirements.txt /project/requirements.txt -RUN python3.10 -m pip install --extra-index-url https://download.pytorch.org/whl/cpu -r /project/requirements.txt diff --git a/language_container/exasol_transformers_extension_container/flavor_base/language_definition b/language_container/exasol_transformers_extension_container/flavor_base/language_definition deleted file mode 100644 index 99a8047c..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/language_definition +++ /dev/null @@ -1 +0,0 @@ -PYTHON3_TE=localzmq+protobuf:///{{ bucketfs_name }}/{{ bucket_name }}/{{ path_in_bucket }}{{ release_name }}?lang=python#buckets/{{ bucketfs_name }}/{{ bucket_name }}/{{ path_in_bucket }}{{ release_name }}/exaudf/exaudfclient_py3 diff --git a/language_container/exasol_transformers_extension_container/flavor_base/release/.gitignore b/language_container/exasol_transformers_extension_container/flavor_base/release/.gitignore deleted file mode 100644 index 1521c8b7..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/release/.gitignore +++ /dev/null @@ -1 +0,0 @@ -dist diff --git a/language_container/exasol_transformers_extension_container/flavor_base/release/Dockerfile b/language_container/exasol_transformers_extension_container/flavor_base/release/Dockerfile deleted file mode 100644 index 8cd825d1..00000000 --- a/language_container/exasol_transformers_extension_container/flavor_base/release/Dockerfile +++ /dev/null @@ -1,8 +0,0 @@ -FROM {{ dependencies }} - -COPY release/dist /project/dist -RUN python3.10 -m pip install --no-deps /project/dist/*.whl - -RUN mkdir -p /build_info/actual_installed_packages/release && \ - /scripts/list_installed_scripts/list_installed_apt.sh > /build_info/actual_installed_packages/release/apt_get_packages && \ - /scripts/list_installed_scripts/list_installed_pip.sh python3.10 > /build_info/actual_installed_packages/release/python3_pip_packages diff --git a/language_container/install_or_update_exaslct.sh b/language_container/install_or_update_exaslct.sh deleted file mode 100644 index 2de662f1..00000000 --- a/language_container/install_or_update_exaslct.sh +++ /dev/null @@ -1,61 +0,0 @@ -#!/usr/bin/env bash -set -euo pipefail - -die() { - echo "$*" 1>&2 - exit 1 -} -download_raw_file_from_github() { - local repo=$1 - local ref=$2 - local remote_file_path=$3 - local local_file_path=$4 - local url="https://api.github.com/repos/$repo/contents/$remote_file_path?ref=$ref" - local arguments=(-s -H 'Accept: application/vnd.github.v3.raw' -L "$url" -o "$local_file_path") - if [ -z "${GITHUB_TOKEN-}" ]; then - curl "${arguments[@]}" - else - curl -H "Authorization: token $GITHUB_TOKEN" "${arguments[@]}" - fi -} -download_and_verify_raw_file_from_github() { - local repo=$1 - local ref=$2 - local remote_file_path=$3 - local file_name=${remote_file_path##*/} - local dir_path=${remote_file_path%$file_name} - local checksum_file_name="${file_name}.sha512sum" - local remote_checksum_file_path="${dir_path}checksums/$checksum_file_name" - - download_raw_file_from_github "$repo" "$ref" "$remote_file_path" "$file_name" || - die "ERROR: Could not download '$remote_file_path' from the github repository '$repo' at ref '$ref'." - download_raw_file_from_github "$repo" "$ref" "$remote_checksum_file_path" "$checksum_file_name" || - die "ERROR: Could not download the checksum for '$remote_file_path' from the github repository '$repo' at ref '$ref'." - sha512sum --check "${checksum_file_name}" || - die "ERROR: Could not verify the checksum for '$remote_file_path' from the github repository '$repo' at ref '$ref'." - -} - -main() { - local exaslct_git_ref="latest" - if [ -n "${1-}" ]; then - exaslct_git_ref="$1" - fi - - local repo="exasol/script-languages-container-tool" - tmp_directory_for_installer="$(mktemp -d)" - trap 'rm -rf -- "$tmp_directory_for_installer"' EXIT - - local installer_file_name="exaslct_installer.sh" - - pushd "$tmp_directory_for_installer" &>/dev/null - - download_and_verify_raw_file_from_github "$repo" "$exaslct_git_ref" "installer/$installer_file_name" - - popd &>/dev/null - - bash "$tmp_directory_for_installer/$installer_file_name" "$exaslct_git_ref" - -} - -main "${@}" diff --git a/noxfile.py b/noxfile.py index 7a5fada2..c3f4b69a 100644 --- a/noxfile.py +++ b/noxfile.py @@ -1,33 +1,20 @@ import sys from pathlib import Path +from exasol_transformers_extension.deployment.language_container import language_container_factory sys.path += [str(Path().parent.absolute())] import nox -from exasol_transformers_extension.deployment.language_container import ( - build_language_container, - export, - find_flavor_path, - prepare_flavor -) ROOT_PATH = Path(__file__).parent EXPORT_PATH = ROOT_PATH / "export" -@nox.session(python=False) -def build_slc(session: nox.Session): - flavor_path = find_flavor_path() - prepare_flavor(flavor_path) - build_language_container(flavor_path) - - @nox.session(python=False) def export_slc(session: nox.Session): - flavor_path = find_flavor_path() - prepare_flavor(flavor_path) - export(flavor_path, EXPORT_PATH) + with language_container_factory() as container_builder: + container_builder.export(EXPORT_PATH) @nox.session(python=False) @@ -39,7 +26,8 @@ def unit_tests(session): def integration_tests(session): # We need to use a external database here, because the itde plugin doesn't provide all necessary options to # configure the database. See the start_database session. - session.run('pytest', '--setup-show', '-s', '--itde-db-version=external', 'tests/integration_tests') + session.run('pytest', '--setup-show', '-s', '--backend=all', '--itde-db-version=external', 'tests/integration_tests') + @nox.session(python=False) def saas_integration_tests(session): @@ -47,18 +35,21 @@ def saas_integration_tests(session): # configure the database. See the start_database session. session.run('pytest', '--setup-show', '-s', '--backend=saas', 'tests/integration_tests/with_db') + @nox.session(python=False) def onprem_integration_tests(session): # We need to use a external database here, because the itde plugin doesn't provide all necessary options to # configure the database. See the start_database session. session.run('pytest', '--setup-show', '-s', '--backend=onprem', '--itde-db-version=external', 'tests/integration_tests/with_db') + @nox.session(python=False) def without_db_integration_tests(session): # We need to use a external database here, because the itde plugin doesn't provide all necessary options to # configure the database. See the start_database session. session.run('pytest', '--setup-show', '-s', '--itde-db-version=external', 'tests/integration_tests/without_db') + @nox.session(python=False) def start_database(session): session.run('itde', 'spawn-test-environment', diff --git a/poetry.lock b/poetry.lock index 47234313..4ac2560e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,45 +1,45 @@ -# This file is automatically @generated by Poetry 1.8.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "accelerate" -version = "0.33.0" +version = "0.34.2" description = "Accelerate" optional = false python-versions = ">=3.8.0" files = [ - {file = "accelerate-0.33.0-py3-none-any.whl", hash = "sha256:0a7f33d60ba09afabd028d4f0856dd19c5a734b7a596d637d9dd6e3d0eadbaf3"}, - {file = "accelerate-0.33.0.tar.gz", hash = "sha256:11ba481ed6ea09191775df55ce464aeeba67a024bd0261a44b77b30fb439e26a"}, + {file = "accelerate-0.34.2-py3-none-any.whl", hash = "sha256:d69159e2c4e4a473d14443b27d2d732929254e826b3ab4813b3785b5ac616c7c"}, + {file = "accelerate-0.34.2.tar.gz", hash = "sha256:98c1ebe1f5a45c0a3af02dc60b5bb8b7d58d60c3326a326a06ce6d956b18ca5b"}, ] [package.dependencies] huggingface-hub = ">=0.21.0" -numpy = ">=1.17,<2.0.0" +numpy = ">=1.17,<3.0.0" packaging = ">=20.0" psutil = "*" pyyaml = "*" -safetensors = ">=0.3.1" +safetensors = ">=0.4.3" torch = ">=1.10.0" [package.extras] -deepspeed = ["deepspeed (<=0.14.0)"] -dev = ["bitsandbytes", "black (>=23.1,<24.0)", "datasets", "diffusers", "evaluate", "hf-doc-builder (>=0.3.0)", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "rich", "ruff (>=0.2.1,<0.3.0)", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +deepspeed = ["deepspeed"] +dev = ["bitsandbytes", "black (>=23.1,<24.0)", "datasets", "diffusers", "evaluate", "hf-doc-builder (>=0.3.0)", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "rich", "ruff (>=0.2.1,<0.3.0)", "scikit-learn", "scipy", "timm", "torchdata (>=0.8.0)", "torchpippy (>=0.2.0)", "tqdm", "transformers"] quality = ["black (>=23.1,<24.0)", "hf-doc-builder (>=0.3.0)", "ruff (>=0.2.1,<0.3.0)"] rich = ["rich"] sagemaker = ["sagemaker"] -test-dev = ["bitsandbytes", "datasets", "diffusers", "evaluate", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +test-dev = ["bitsandbytes", "datasets", "diffusers", "evaluate", "scikit-learn", "scipy", "timm", "torchdata (>=0.8.0)", "torchpippy (>=0.2.0)", "tqdm", "transformers"] test-prod = ["parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist"] test-trackers = ["comet-ml", "dvclive", "tensorboard", "wandb"] -testing = ["bitsandbytes", "datasets", "diffusers", "evaluate", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "scikit-learn", "scipy", "timm", "torchpippy (>=0.2.0)", "tqdm", "transformers"] +testing = ["bitsandbytes", "datasets", "diffusers", "evaluate", "parameterized", "pytest (>=7.2.0,<=8.0.0)", "pytest-subtests", "pytest-xdist", "scikit-learn", "scipy", "timm", "torchdata (>=0.8.0)", "torchpippy (>=0.2.0)", "tqdm", "transformers"] [[package]] name = "anyio" -version = "4.4.0" +version = "4.6.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, - {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, + {file = "anyio-4.6.0-py3-none-any.whl", hash = "sha256:c7d2e9d63e31599eeb636c8c5c03a7e108d73b345f064f1c19fdc87b79036a9a"}, + {file = "anyio-4.6.0.tar.gz", hash = "sha256:137b4559cbb034c477165047febb6ff83f390fc3b20bf181c1fc0a728cb8beeb"}, ] [package.dependencies] @@ -49,9 +49,9 @@ sniffio = ">=1.1" typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] -doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (>=0.23)"] +doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.21.0b1)"] +trio = ["trio (>=0.26.1)"] [[package]] name = "argcomplete" @@ -128,89 +128,89 @@ typecheck = ["mypy"] [[package]] name = "certifi" -version = "2024.7.4" +version = "2024.8.30" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"}, - {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"}, + {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"}, + {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"}, ] 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parser.addoption( - _BACKEND_OPTION, - action="append", - default=[], - help=f"""List of test backends (onprem, saas). By default, the tests will be - run on both backends. To select only one of the backends add the - argument {_BACKEND_OPTION}= to the command line. Both - backends can be selected like ... {_BACKEND_OPTION}=onprem {_BACKEND_OPTION}=saas, - but this is the same as the default. - """, - ) diff --git a/tests/fixtures/bucketfs_fixture.py b/tests/fixtures/bucketfs_fixture.py index 6d8190a4..636c0efb 100644 --- a/tests/fixtures/bucketfs_fixture.py +++ b/tests/fixtures/bucketfs_fixture.py @@ -1,53 +1,9 @@ -from __future__ import annotations - import exasol.bucketfs as bfs import pytest -import exasol.pytest_itde - -from exasol_transformers_extension.utils.bucketfs_operations import create_bucketfs_location -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM, BACKEND_SAAS -from tests.utils.parameters import bucketfs_params - - -@pytest.fixture(scope="session") -def bucketfs_location_onprem(backend, - bucketfs_config: exasol.pytest_itde.config.BucketFs) -> bfs.path.PathLike | None: - if backend == BACKEND_ONPREM: - return create_bucketfs_location( - path_in_bucket=bucketfs_params.path_in_bucket, - bucketfs_name=bucketfs_params.name, - bucketfs_url=bucketfs_config.url, - bucketfs_user=bucketfs_config.username, - bucketfs_password=bucketfs_config.password, - bucket=bucketfs_params.bucket) - return None - - -@pytest.fixture(scope="session") -def bucketfs_location_saas(backend, - saas_url, - saas_account_id, - saas_database_id, - saas_token) -> bfs.path.PathLike | None: - if backend == BACKEND_SAAS: - return create_bucketfs_location( - path_in_bucket=bucketfs_params.path_in_bucket, - saas_url=saas_url, - saas_account_id=saas_account_id, - saas_database_id=saas_database_id, - saas_token=saas_token) - return None +from tests.utils.parameters import PATH_IN_BUCKET @pytest.fixture(scope="session") -def bucketfs_location(backend, - bucketfs_location_onprem, - bucketfs_location_saas) -> bfs.path.PathLike: - if backend == BACKEND_ONPREM: - assert bucketfs_location_onprem is not None - return bucketfs_location_onprem - elif backend == BACKEND_SAAS: - assert bucketfs_location_saas is not None - return bucketfs_location_saas - else: - raise ValueError(f'No bucketfs_location fixture for the backend {backend}') +def bucketfs_location(backend_aware_bucketfs_params) -> bfs.path.PathLike: + return bfs.path.build_path(**backend_aware_bucketfs_params, + path=PATH_IN_BUCKET) diff --git a/tests/fixtures/database_connection_fixture.py b/tests/fixtures/database_connection_fixture.py deleted file mode 100644 index 8206ced5..00000000 --- a/tests/fixtures/database_connection_fixture.py +++ /dev/null @@ -1,126 +0,0 @@ -from __future__ import annotations -import os -from datetime import timedelta -from contextlib import ExitStack - -import ssl -import pyexasol -import pytest -from _pytest.fixtures import FixtureRequest -from exasol.saas.client.api_access import ( - OpenApiAccess, - create_saas_client, - timestamp_name, - get_connection_params -) -from exasol.pytest_itde import config - -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM, BACKEND_SAAS - -CURRENT_SAAS_DATABASE_ID = pytest.StashKey[str]() - - -def _env(var: str) -> str: - result = os.environ.get(var) - if result: - return result - raise RuntimeError(f"Environment variable {var} is empty.") - - -_BACKEND_OPTION = '--backend' - - -@pytest.fixture(scope='session', params=[BACKEND_ONPREM, BACKEND_SAAS]) -def backend(request) -> str: - backend_options = request.config.getoption(_BACKEND_OPTION) - if backend_options and (request.param not in backend_options): - pytest.skip() - return request.param - - -@pytest.fixture(scope="session") -def saas_url(backend) -> str: - if backend == BACKEND_SAAS: - return _env("SAAS_HOST") - - -@pytest.fixture(scope="session") -def saas_account_id(backend) -> str: - if backend == BACKEND_SAAS: - return _env("SAAS_ACCOUNT_ID") - - -@pytest.fixture(scope="session") -def saas_token(backend) -> str: - if backend == BACKEND_SAAS: - return _env("SAAS_PAT") - - - -@pytest.fixture(scope="session") -def saas_database_id(request: FixtureRequest, backend, saas_url, saas_account_id, saas_token) -> str: - if backend == BACKEND_SAAS: - if CURRENT_SAAS_DATABASE_ID not in request.session.stash: - with ExitStack() as stack: - # Create and configure the SaaS client. - client = create_saas_client(host=saas_url, pat=saas_token) - api_access = OpenApiAccess(client=client, account_id=saas_account_id) - stack.enter_context(api_access.allowed_ip()) - - # Create a temporary database and waite till it becomes operational - db = stack.enter_context(api_access.database( - name=timestamp_name('TE_CI'), - idle_time=timedelta(hours=12))) - api_access.wait_until_running(db.id) - request.session.stash[CURRENT_SAAS_DATABASE_ID] = db.id - yield db.id - else: - yield request.session.stash[CURRENT_SAAS_DATABASE_ID] - else: - yield '' - - -@pytest.fixture(scope="session") -def pyexasol_connection_onprem(backend, - connection_factory, - exasol_config: config.Exasol) -> pyexasol.ExaConnection | None: - if backend == BACKEND_ONPREM: - with connection_factory(exasol_config) as conn: - yield conn - else: - yield None - - -@pytest.fixture(scope="session") -def pyexasol_connection_saas(backend, - saas_url, - saas_account_id, - saas_database_id, - saas_token) -> pyexasol.ExaConnection | None: - if backend == BACKEND_SAAS: - # Create a connection to the database. - conn_params = get_connection_params(host=saas_url, - account_id=saas_account_id, - database_id=saas_database_id, - pat=saas_token) - with pyexasol.connect(**conn_params, - encryption=True, - websocket_sslopt={"cert_reqs": ssl.CERT_NONE}, - compression=True) as conn: - yield conn - else: - yield None - - -@pytest.fixture(scope="session") -def pyexasol_connection(backend, - pyexasol_connection_onprem, - pyexasol_connection_saas) -> pyexasol.ExaConnection: - if backend == BACKEND_ONPREM: - assert pyexasol_connection_onprem is not None - yield pyexasol_connection_onprem - elif backend == BACKEND_SAAS: - assert pyexasol_connection_saas is not None - yield pyexasol_connection_saas - else: - raise ValueError(f'No pyexasol_connection fixture for the backend {backend}') diff --git a/tests/fixtures/database_connection_fixture_constants.py b/tests/fixtures/database_connection_fixture_constants.py deleted file mode 100644 index 0734655a..00000000 --- a/tests/fixtures/database_connection_fixture_constants.py +++ /dev/null @@ -1,4 +0,0 @@ -from __future__ import annotations - -BACKEND_ONPREM = 'onprem' -BACKEND_SAAS = 'saas' diff --git a/tests/fixtures/language_container_fixture.py b/tests/fixtures/language_container_fixture.py index ef316ae2..b4065700 100644 --- a/tests/fixtures/language_container_fixture.py +++ b/tests/fixtures/language_container_fixture.py @@ -1,66 +1,12 @@ -import os -import subprocess -import time -from pathlib import Path -from typing import Dict - import pytest -from _pytest.fixtures import FixtureRequest -from exasol.python_extension_common.deployment.language_container_deployer import LanguageContainerDeployer -from exasol_script_languages_container_tool.lib.tasks.export.export_info import ExportInfo - -from exasol_transformers_extension.deployment import language_container -from tests.fixtures.database_connection_fixture_constants import BACKEND_SAAS -from tests.fixtures.language_container_fixture_constants import LANGUAGE_ALIAS, CONTAINER_FILE_NAME - -SLC_EXPORT = pytest.StashKey[ExportInfo]() -SLC_UPLOADED = pytest.StashKey[Dict[str, bool]]() - - -@pytest.fixture(scope="session") -def flavor_path() -> Path: - return language_container.find_flavor_path() - - -@pytest.fixture(scope="session") -def export_slc(request: FixtureRequest, flavor_path: Path) -> ExportInfo: - if SLC_EXPORT not in request.session.stash: - language_container.prepare_flavor(flavor_path=flavor_path) - export_result = language_container.export(flavor_path=flavor_path) - export_info = export_result.export_infos[str(flavor_path)]["release"] - request.session.stash[SLC_EXPORT] = export_info - return request.session.stash[SLC_EXPORT] - - -@pytest.fixture(scope="session") -def upload_slc(request: FixtureRequest, backend, bucketfs_location, pyexasol_connection, - export_slc: ExportInfo) -> None: - if SLC_UPLOADED not in request.session.stash: - request.session.stash[SLC_UPLOADED] = dict() - if backend not in request.session.stash[SLC_UPLOADED]: - cleanup_images() - - container_file_path = Path(export_slc.cache_file) - - deployer = LanguageContainerDeployer(pyexasol_connection=pyexasol_connection, - language_alias=LANGUAGE_ALIAS, - bucketfs_path=bucketfs_location) - - deployer.run(container_file=container_file_path, - bucket_file_path=CONTAINER_FILE_NAME, - allow_override=True, - wait_for_completion=True) - # Let's see if this helps - if backend == BACKEND_SAAS: - time.sleep(300) - request.session.stash[SLC_UPLOADED][backend] = True +from exasol_transformers_extension.deployment.language_container import language_container_factory -def cleanup_images(): - if "GITHUB_ACTIONS" in os.environ: - # Remove image and build output to reduce the disk usage in CI. - # We currently use Github Actions as the CI and its disk is limited to 14 GB. - # TODO: This code can be removed when we move to a CI with larger disks. - rm_docker_image = """docker images -a | grep 'transformers' | awk '{print $3}' | xargs docker rmi""" - subprocess.run(rm_docker_image, shell=True) +@pytest.fixture(scope='session') +def slc_builder(use_onprem, use_saas): + if use_onprem or use_saas: + with language_container_factory() as container_builder: + yield container_builder + else: + yield None diff --git a/tests/fixtures/language_container_fixture_constants.py b/tests/fixtures/language_container_fixture_constants.py deleted file mode 100644 index efd84eaa..00000000 --- a/tests/fixtures/language_container_fixture_constants.py +++ /dev/null @@ -1,2 +0,0 @@ -LANGUAGE_ALIAS = "PYTHON3_TE" -CONTAINER_FILE_NAME = "exasol_transformers_extension_container.tar.gz" diff --git a/tests/fixtures/script_deployment_fixture.py b/tests/fixtures/script_deployment_fixture.py index c12bad02..38a5b18b 100644 --- a/tests/fixtures/script_deployment_fixture.py +++ b/tests/fixtures/script_deployment_fixture.py @@ -1,68 +1,65 @@ -from __future__ import annotations +""" +This is rather ugly workaround for the problem with incompatible names of the DB and +BucketFS parameters, that are used in different scenarios. + +In the ideal world, the parameters returned by the backend_aware_database_params and +backend_aware_bucketfs_params fixtures would be suitable for both creating respectively +a DB or BFS connection and using them in a command line (or more precisely, simulating +the command line in the context of tests). Unfortunately, the names and even the meanings +of some of the parameters in those two scenarios do not match. +At some point, we will standardise the names and replace the deploy_params and upload_params +fixtures with backend_aware_database_params and backend_aware_bucketfs_params. +""" +from __future__ import annotations from typing import Any from urllib.parse import urlparse - import pytest -from exasol.pytest_itde import config +from exasol.pytest_backend import BACKEND_ONPREM -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM, BACKEND_SAAS -from tests.utils.parameters import bucketfs_params +_deploy_param_map = { + 'dsn': 'dsn', + 'user': 'db_user', + 'password': 'db_pass' +} -@pytest.fixture(scope="session") -def deploy_params_onprem(exasol_config: config.Exasol) -> dict[str, Any]: - return { - 'dsn': f"{exasol_config.host}:{exasol_config.port}", - 'db_user': exasol_config.username, - 'db_pass': exasol_config.password - } +_upload_param_map = { + 'username': 'bucketfs-user', + 'password': 'bucketfs-password', + 'service_name': 'bucketfs-name', + 'bucket_name': 'bucket', + 'url': 'saas_url', + 'account_id': 'saas_account_id', + 'database_id': 'saas_database_id', + 'pat': 'saas_token' +} -@pytest.fixture(scope="session") -def upload_params_onprem(bucketfs_config: config.BucketFs): - parsed_url = urlparse(bucketfs_config.url) +def _parse_bucketfs_url(url: str) -> dict[str, Any]: + parsed_url = urlparse(url) host, port = parsed_url.netloc.split(":") return { - "bucketfs-name": bucketfs_params.name, "bucketfs-host": host, "bucketfs-port": port, - "bucketfs-use-https": False, - "bucketfs-user": bucketfs_config.username, - "bucketfs-password": bucketfs_config.password, - "bucket": bucketfs_params.bucket + "bucketfs-use-https": parsed_url.scheme.lower() == 'https', } -@pytest.fixture(scope="session") -def deploy_params_saas(saas_url, saas_account_id, saas_database_id, saas_token) -> dict[str, Any]: - yield { - 'saas_url': saas_url, - 'saas_account_id': saas_account_id, - 'saas_database_id': saas_database_id, - 'saas_token': saas_token - } +def _translate_params(source: dict[str, Any], param_map: dict[str, str]) -> dict[str, Any]: + return {param_map[k]: v for k, v in source.items() if k in param_map} @pytest.fixture(scope="session") -def deploy_params(backend, - deploy_params_onprem, - deploy_params_saas) -> dict[str, Any]: - if backend == BACKEND_ONPREM: - yield deploy_params_onprem - elif backend == BACKEND_SAAS: - yield deploy_params_saas - else: - raise ValueError(f'No deploy_params fixture for the backend {backend}') +def deploy_params(backend_aware_database_params) -> dict[str, Any]: + return _translate_params(backend_aware_database_params, _deploy_param_map) @pytest.fixture(scope="session") -def upload_params(backend, - upload_params_onprem, - deploy_params_saas) -> dict[str, Any]: +def upload_params(backend, backend_aware_bucketfs_params) -> dict[str, Any]: if backend == BACKEND_ONPREM: - yield upload_params_onprem - elif backend == BACKEND_SAAS: - yield deploy_params_saas - else: - raise ValueError(f'No deploy_params fixture for the backend {backend}') + mapped_params = _translate_params(backend_aware_bucketfs_params, _upload_param_map) + mapped_params.pop(_upload_param_map['url']) + mapped_params.update(_parse_bucketfs_url(backend_aware_bucketfs_params['url'])) + return mapped_params + return _translate_params(backend_aware_bucketfs_params, _upload_param_map) diff --git a/tests/fixtures/setup_database_fixture.py b/tests/fixtures/setup_database_fixture.py index 9d675777..4450f6ba 100644 --- a/tests/fixtures/setup_database_fixture.py +++ b/tests/fixtures/setup_database_fixture.py @@ -1,28 +1,14 @@ from typing import Tuple -import json - -from urllib.parse import urlparse - -import pyexasol import pytest from pyexasol import ExaConnection -from exasol.pytest_itde import config -import exasol.bucketfs as bfs from exasol_transformers_extension.deployment.scripts_deployer import \ ScriptsDeployer -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM, BACKEND_SAAS -from tests.utils.parameters import bucketfs_params -from tests.fixtures.language_container_fixture_constants import LANGUAGE_ALIAS +from tests.utils.parameters import PATH_IN_BUCKET BUCKETFS_CONNECTION_NAME = "TEST_TE_BFS_CONNECTION" SCHEMA_NAME = "TEST_INTEGRATION" - - -def _create_schema(pyexasol_connection: ExaConnection) -> None: - pyexasol_connection.execute(f"DROP SCHEMA IF EXISTS {SCHEMA_NAME} CASCADE;") - pyexasol_connection.execute(f"CREATE SCHEMA {SCHEMA_NAME};") - pyexasol_connection.execute(f"OPEN SCHEMA {SCHEMA_NAME};") +LANGUAGE_ALIAS = "TEST_PYTHON3_TE" def _deploy_scripts(pyexasol_connection: ExaConnection) -> None: @@ -32,78 +18,34 @@ def _deploy_scripts(pyexasol_connection: ExaConnection) -> None: scripts_deployer.deploy_scripts() -def _to_json_str(**kwargs) -> str: - filtered_kwargs = {k: v for k, v in kwargs.items() if v is not None} - return json.dumps(filtered_kwargs) - - -def _create_bucketfs_connection(pyexasol_connection: ExaConnection, - conn_to: str, - conn_user: str, - conn_password: str) -> None: - - query = (f"CREATE OR REPLACE CONNECTION {BUCKETFS_CONNECTION_NAME} " - f"TO '{conn_to}' " - f"USER '{conn_user}' " - f"IDENTIFIED BY '{conn_password}'") - pyexasol_connection.execute(query) - - -def _create_bucketfs_connection_onprem(bucketfs_config: config.BucketFs, - pyexasol_connection: ExaConnection) -> None: - conn_to = _to_json_str(backend=bfs.path.StorageBackend.onprem.name, - url=bucketfs_config.url, - service_name=bucketfs_params.name, - bucket_name=bucketfs_params.bucket, - path=bucketfs_params.path_in_bucket, - verify=False) - conn_user = _to_json_str(username=bucketfs_config.username) - conn_password = _to_json_str(password=bucketfs_config.password) - - _create_bucketfs_connection(pyexasol_connection, conn_to, conn_user, conn_password) - - -def _create_bucketfs_connection_saas(url: str, - account_id: str, - database_id: str, - token: str, - pyexasol_connection: ExaConnection) -> None: +@pytest.fixture(scope="session") +def db_schema_name() -> str: + return SCHEMA_NAME - conn_to = _to_json_str(backend=bfs.path.StorageBackend.saas.name, - url=url, - path=bucketfs_params.path_in_bucket) - conn_user = _to_json_str(account_id=account_id, - database_id=database_id) - conn_password = _to_json_str(pat=token) - _create_bucketfs_connection(pyexasol_connection, conn_to, conn_user, conn_password) +@pytest.fixture(scope='session') +def language_alias(project_short_tag): + return LANGUAGE_ALIAS @pytest.fixture(scope="session") -def setup_database(backend: bfs.path.StorageBackend, - bucketfs_config: config.BucketFs, - saas_url: str, - saas_account_id: str, - saas_database_id: str, - saas_token: str, - pyexasol_connection: ExaConnection, - upload_slc) -> Tuple[str, str]: - - _create_schema(pyexasol_connection) +def setup_database(backend, + pyexasol_connection, + bucketfs_connection_factory, + deployed_slc) -> Tuple[str, str]: + # This is a temporary workaround for the problem with slow slc file extraction + # at a SaaS database. To be removed when a proper completion check is in place. + if backend == 'saas': + import time + time.sleep(30) + + bucketfs_connection_factory(BUCKETFS_CONNECTION_NAME, PATH_IN_BUCKET) _deploy_scripts(pyexasol_connection) - if backend == BACKEND_ONPREM: - _create_bucketfs_connection_onprem(bucketfs_config, pyexasol_connection) - elif backend == BACKEND_SAAS: - _create_bucketfs_connection_saas(saas_url, saas_account_id, saas_database_id, saas_token, - pyexasol_connection) - else: - raise ValueError(f'No setup_database fixture for the backend {backend}') - return BUCKETFS_CONNECTION_NAME, SCHEMA_NAME @pytest.fixture() -def db_conn(setup_database, pyexasol_connection) -> pyexasol.ExaConnection: +def db_conn(setup_database, pyexasol_connection) -> ExaConnection: """ Per-test fixture that returns the same session-wide pyexasol connection, but makes sure the default schema is open. diff --git a/tests/integration_tests/with_db/deployment/test_scripts_deployer.py b/tests/integration_tests/with_db/deployment/test_scripts_deployer.py index 9172af2d..0e0c2f1c 100644 --- a/tests/integration_tests/with_db/deployment/test_scripts_deployer.py +++ b/tests/integration_tests/with_db/deployment/test_scripts_deployer.py @@ -3,29 +3,28 @@ import pytest from pyexasol import ExaConnection -from exasol.pytest_itde import config import exasol.bucketfs as bfs from exasol.python_extension_common.deployment.language_container_validator import temp_schema +from exasol.pytest_backend import BACKEND_ONPREM from exasol_transformers_extension.deployment.scripts_deployer import \ ScriptsDeployer -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM from tests.utils.db_queries import DBQueries -from tests.fixtures.language_container_fixture_constants import LANGUAGE_ALIAS def test_scripts_deployer( backend, deploy_params: dict[str, Any], pyexasol_connection: ExaConnection, - upload_slc): + language_alias, + deployed_slc): with temp_schema(pyexasol_connection) as schema_name: # We validate the server certificate in SaaS, but not in the Docker DB cert_validation = backend == bfs.path.StorageBackend.saas ScriptsDeployer.run(**deploy_params, schema=schema_name, - language_alias=LANGUAGE_ALIAS, + language_alias=language_alias, use_ssl_cert_validation=cert_validation) assert DBQueries.check_all_scripts_deployed( pyexasol_connection, schema_name) @@ -33,9 +32,10 @@ def test_scripts_deployer( def test_scripts_deployer_no_schema_creation_permission( backend, + deploy_params, pyexasol_connection, - exasol_config: config.Exasol, - upload_slc): + language_alias, + deployed_slc): if backend != BACKEND_ONPREM: pytest.skip(("We run this test only with the Docker-DB, " @@ -52,11 +52,11 @@ def test_scripts_deployer_no_schema_creation_permission( pyexasol_connection.execute(f"GRANT {permission} TO {limited_user}; ") ScriptsDeployer.run( - dsn=f"{exasol_config.host}:{exasol_config.port}", + dsn=deploy_params['dsn'], db_user=limited_user, db_pass=limited_user_password, schema=schema_name, - language_alias=LANGUAGE_ALIAS, + language_alias=language_alias, ssl_trusted_ca="", use_ssl_cert_validation=False ) diff --git a/tests/integration_tests/with_db/deployment/test_scripts_deployer_cli.py b/tests/integration_tests/with_db/deployment/test_scripts_deployer_cli.py index 9fe24743..31dfc174 100644 --- a/tests/integration_tests/with_db/deployment/test_scripts_deployer_cli.py +++ b/tests/integration_tests/with_db/deployment/test_scripts_deployer_cli.py @@ -4,12 +4,9 @@ import pytest from click.testing import CliRunner from pyexasol import ExaConnection, ExaConnectionFailedError -import exasol.bucketfs as bfs +from exasol.pytest_backend import BACKEND_ONPREM, BACKEND_SAAS from exasol.python_extension_common.deployment.language_container_validator import temp_schema -from tests.fixtures.database_connection_fixture_constants import BACKEND_ONPREM, BACKEND_SAAS -from tests.fixtures.language_container_fixture_constants import LANGUAGE_ALIAS - from exasol_transformers_extension import deploy from tests.utils.db_queries import DBQueries from tests.utils.parameters import get_arg_list @@ -18,10 +15,11 @@ def test_scripts_deployer_cli(backend, deploy_params: dict[str, Any], pyexasol_connection: ExaConnection, - upload_slc): + language_alias, + deployed_slc): with temp_schema(pyexasol_connection) as schema_name: - args_list = get_arg_list(**deploy_params, schema=schema_name, language_alias=LANGUAGE_ALIAS) + args_list = get_arg_list(**deploy_params, schema=schema_name, language_alias=language_alias) args_list.insert(0, "scripts") # We validate the server certificate in SaaS, but not in the Docker DB if backend == BACKEND_SAAS: @@ -40,13 +38,14 @@ def test_scripts_deployer_cli(backend, def test_scripts_deployer_cli_with_encryption_verify(backend, deploy_params: dict[str, Any], pyexasol_connection: ExaConnection, - upload_slc): + language_alias, + deployed_slc): if backend != BACKEND_ONPREM: pytest.skip(("We run this test only with the Docker-DB " "because SaaS always verifies the SSL certificate")) with temp_schema(pyexasol_connection) as schema_name: - args_list = get_arg_list(**deploy_params, schema=schema_name, language_alias=LANGUAGE_ALIAS) + args_list = get_arg_list(**deploy_params, schema=schema_name, language_alias=language_alias) args_list.insert(0, "scripts") args_list.append("--use-ssl-cert-validation") expected_exception_message = '[SSL: CERTIFICATE_VERIFY_FAILED]' diff --git a/tests/integration_tests/with_db/test_upload_model.py b/tests/integration_tests/with_db/test_upload_model.py index 799c53ea..1cb5893d 100644 --- a/tests/integration_tests/with_db/test_upload_model.py +++ b/tests/integration_tests/with_db/test_upload_model.py @@ -9,7 +9,7 @@ get_BucketFSModelSpecification_from_model_Specs) from tests.integration_tests.with_db.udfs.python_rows_to_sql import python_rows_to_sql from tests.utils import postprocessing -from tests.utils.parameters import bucketfs_params, model_params, get_arg_list +from tests.utils.parameters import PATH_IN_BUCKET, model_params, get_arg_list def adapt_file_to_upload(path: PosixPath, download_path: PosixPath): @@ -36,7 +36,7 @@ def test_model_upload(upload_params, upload_path = current_model_specs.get_bucketfs_model_save_path() args_list = get_arg_list(**upload_params, - path_in_bucket=bucketfs_params.path_in_bucket, + path_in_bucket=PATH_IN_BUCKET, model_name=model_name, sub_dir=sub_dir, task_type="filling_mask") diff --git a/tests/integration_tests/without_db/test_slc_size.py b/tests/integration_tests/without_db/test_slc_size.py deleted file mode 100644 index 45533182..00000000 --- a/tests/integration_tests/without_db/test_slc_size.py +++ /dev/null @@ -1,9 +0,0 @@ -from pathlib import Path - -import humanfriendly -from exasol_script_languages_container_tool.lib.tasks.export.export_info import ExportInfo - - -def test_slc_size_below_2gb(export_slc: ExportInfo): - stat_result = Path(export_slc.cache_file).resolve().stat() - assert stat_result.st_size < humanfriendly.parse_size(size="2GB") diff --git a/tests/unit_tests/deployment/test_language_container.py b/tests/unit_tests/deployment/test_language_container.py new file mode 100644 index 00000000..ca069ae8 --- /dev/null +++ b/tests/unit_tests/deployment/test_language_container.py @@ -0,0 +1,20 @@ +from exasol_transformers_extension.deployment.language_container import add_pytorch_to_requirements +from exasol.python_extension_common.deployment.language_container_builder import LanguageContainerBuilder + +_dockerfile_template = """ +COPY dependencies/requirements.txt /project/requirements.txt +RUN python3.10 -m pip install -r /project/requirements.txt{0} +RUN something_else +""" + + +def test_add_pytorch_to_requirements(): + source_dockerfile = _dockerfile_template.format('') + expected_dockerfile = _dockerfile_template.format( + ' --extra-index-url https://download.pytorch.org/whl/cpu') + + with LanguageContainerBuilder("dummy_container") as container_builder: + dockerfile_file = 'flavor_base/dependencies/Dockerfile' + container_builder.write_file(dockerfile_file, source_dockerfile) + add_pytorch_to_requirements(container_builder) + assert container_builder.read_file(dockerfile_file) == expected_dockerfile diff --git a/tests/utils/parameters.py b/tests/utils/parameters.py index 433b6e59..d30a030a 100644 --- a/tests/utils/parameters.py +++ b/tests/utils/parameters.py @@ -3,13 +3,7 @@ from exasol_transformers_extension.utils.model_specification import ModelSpecification - -@dataclass(frozen=True) -class BucketFSParams: - real_port: str - name: str - bucket: str - path_in_bucket: str +PATH_IN_BUCKET = "container" @dataclass(frozen=True) @@ -27,12 +21,6 @@ class ModelParams: sub_dir: str -bucketfs_params = BucketFSParams( - real_port="6583", - name="bfsdefault", - bucket="default", - path_in_bucket="container") - model_params = ModelParams( base_model_specs=ModelSpecification('bert-base-uncased', "need to set this task_type"), #fill mask seq2seq_model_specs=ModelSpecification("t5-small", "translation"),