diff --git a/doc/changes/changes_0.6.0.md b/doc/changes/changes_0.6.0.md index f7d2136c..14b85a71 100644 --- a/doc/changes/changes_0.6.0.md +++ b/doc/changes/changes_0.6.0.md @@ -13,7 +13,8 @@ T.B.D ### Bug Fixes - - # 134: Fixed slc download still assuming existence of slc-parts + - # 134: Fixed slc download still assuming existence of slc-parts + - # 124: Fixed input validation in extract_unique_model_dataframes_from_batch ### Refactorings diff --git a/exasol_transformers_extension/udfs/models/base_model_udf.py b/exasol_transformers_extension/udfs/models/base_model_udf.py index edccfc32..5f4a311a 100644 --- a/exasol_transformers_extension/udfs/models/base_model_udf.py +++ b/exasol_transformers_extension/udfs/models/base_model_udf.py @@ -51,7 +51,6 @@ def run(self, ctx): batch_df = ctx.get_dataframe(num_rows=self.batch_size, start_col=1) if batch_df is None: break - predictions_df = self.get_predictions_from_batch(batch_df) ctx.emit(predictions_df) @@ -66,8 +65,12 @@ def get_predictions_from_batch(self, batch_df: pd.DataFrame) -> pd.DataFrame: :return: Prediction results of the corresponding batched dataframe """ result_df_list = [] - for model_df in \ - self.extract_unique_model_dataframes_from_batch(batch_df): + + unique_model_dataframes = self.extract_unique_model_dataframes_from_batch(self, batch_df) + for model_df in unique_model_dataframes: + if "error_message" in model_df: + result_df_list.append(model_df) + continue try: self.check_cache(model_df) except Exception as exc: @@ -95,8 +98,7 @@ def get_prediction_from_unique_param_based_dataframes(self, model_df) \ :return: List of prediction results """ result_df_list = [] - for param_based_model_df in \ - self.extract_unique_param_based_dataframes(model_df): + for param_based_model_df in self.extract_unique_param_based_dataframes(model_df): try: result_df = self.get_prediction(param_based_model_df) result_df_list.append(result_df) @@ -105,11 +107,17 @@ def get_prediction_from_unique_param_based_dataframes(self, model_df) \ result_with_error_df = self.get_result_with_error( param_based_model_df, stack_trace) result_df_list.append(result_with_error_df) - return result_df_list @staticmethod - def extract_unique_model_dataframes_from_batch( + def _check_values_not_null(model_name, bucketfs_conn, sub_dir): + if not (model_name and bucketfs_conn and sub_dir): + error_message = f"For each model model_name, bucketfs_conn and sub_dir need to be provided. " \ + f"Found model_name = {model_name}, bucketfs_conn = {bucketfs_conn}, sub_dir = {sub_dir}" + raise ValueError(error_message) + + @staticmethod + def extract_unique_model_dataframes_from_batch(self, batch_df: pd.DataFrame) -> Iterator[pd.DataFrame]: """ Extract unique model dataframes with the same model_name, bucketfs_conn, @@ -123,12 +131,23 @@ def extract_unique_model_dataframes_from_batch( unique_values = dataframe_operations.get_unique_values( batch_df, constants.ORDERED_COLUMNS, sort=True) + for model_name, bucketfs_conn, token_conn, sub_dir in unique_values: + try: + self._check_values_not_null(model_name, bucketfs_conn, sub_dir) + except ValueError: + stack_trace = traceback.format_exc() + result_with_error_df = self.get_result_with_error( + batch_df, stack_trace) + yield result_with_error_df + return + selections = ( (batch_df['model_name'] == model_name) & (batch_df['bucketfs_conn'] == bucketfs_conn) & (batch_df['sub_dir'] == sub_dir) ) + if token_conn is None: selections 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[[package]] name = "virtualenv" -version = "20.24.5" +version = "20.24.6" description = "Virtual Python Environment builder" category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"}, - {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"}, + {file = "virtualenv-20.24.6-py3-none-any.whl", hash = "sha256:520d056652454c5098a00c0f073611ccbea4c79089331f60bf9d7ba247bb7381"}, + {file = "virtualenv-20.24.6.tar.gz", hash = "sha256:02ece4f56fbf939dbbc33c0715159951d6bf14aaf5457b092e4548e1382455af"}, ] [package.dependencies] @@ -2153,14 +2274,14 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess [[package]] name = "websocket-client" -version = "1.6.2" +version = "1.6.4" description = "WebSocket client for Python with low level API options" category = "main" optional = false python-versions = ">=3.8" files = [ - {file = "websocket-client-1.6.2.tar.gz", hash = "sha256:53e95c826bf800c4c465f50093a8c4ff091c7327023b10bfaff40cf1ef170eaa"}, - {file = "websocket_client-1.6.2-py3-none-any.whl", hash = "sha256:ce54f419dfae71f4bdba69ebe65bf7f0a93fe71bc009ad3a010aacc3eebad537"}, + {file = "websocket-client-1.6.4.tar.gz", hash = "sha256:b3324019b3c28572086c4a319f91d1dcd44e6e11cd340232978c684a7650d0df"}, + {file = "websocket_client-1.6.4-py3-none-any.whl", hash = "sha256:084072e0a7f5f347ef2ac3d8698a5e0b4ffbfcab607628cadabc650fc9a83a24"}, ] [package.extras] @@ -2255,18 +2376,18 @@ files = [ [[package]] name = "zipp" -version = "3.16.2" +version = "3.17.0" description = "Backport of pathlib-compatible object wrapper for zip files" category = "main" optional = false python-versions = ">=3.8" files = [ - {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"}, - {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"}, + {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, + {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] [metadata] diff --git a/tests/unit_tests/udfs/base_model_dummy_implementation.py b/tests/unit_tests/udfs/base_model_dummy_implementation.py new file mode 100644 index 00000000..40a782cd --- /dev/null +++ b/tests/unit_tests/udfs/base_model_dummy_implementation.py @@ -0,0 +1,54 @@ + +import pandas as pd +import transformers +from typing import List, Iterator, Any, Dict, Union +from exasol_transformers_extension.udfs.models.base_model_udf import \ + BaseModelUDF + + +class DummyImplementationUDF(BaseModelUDF): + def __init__(self, + exa, + batch_size=100, + pipeline=transformers.pipeline, + base_model=transformers.AutoModel, + tokenizer=transformers.AutoTokenizer): + super().__init__(exa, batch_size, pipeline, base_model, + tokenizer, 'dummy_task') + self._desired_fields_in_prediction = ["answer", "score"] + self.new_columns = ["answer", "score", "error_message"] + + def extract_unique_param_based_dataframes( + self, model_df: pd.DataFrame) -> Iterator[pd.DataFrame]: + + yield model_df + + def execute_prediction(self, model_df: pd.DataFrame) -> \ + List[Union[Dict[str, Any], List[Dict[str, Any]]]]: + dummy_result = [{"answer": True, "score": "1"}] + return dummy_result + + def append_predictions_to_input_dataframe( + self, model_df: pd.DataFrame, pred_df_list: List[pd.DataFrame]) \ + -> pd.DataFrame: + + # Concat predictions and model_df + pred_df = pd.concat(pred_df_list, axis=0).reset_index(drop=True) + model_df = pd.concat([model_df, pred_df], axis=1) + return model_df + + def create_dataframes_from_predictions( + self, predictions: List[Union[ + Dict[str, Any], List[Dict[str, Any]]]]) -> List[pd.DataFrame]: + results_df_list = [] + for result in predictions: + result_df = pd.DataFrame(result, index=[0]) + results_df_list.append(result_df) + return results_df_list + + def load_models(self, model_name: str, token_conn_name: str) -> None: + token = False + self.last_loaded_model = self.base_model.from_pretrained( + model_name, cache_dir=self.cache_dir, use_auth_token=token) + self.last_loaded_tokenizer = self.tokenizer.from_pretrained( + model_name, cache_dir=self.cache_dir, use_auth_token=token) \ No newline at end of file diff --git a/tests/unit_tests/udfs/test_base_udf.py b/tests/unit_tests/udfs/test_base_udf.py new file mode 100644 index 00000000..4d188541 --- /dev/null +++ b/tests/unit_tests/udfs/test_base_udf.py @@ -0,0 +1,141 @@ +from typing import Union, Any, Tuple, List +from unittest.mock import create_autospec, MagicMock, call, Mock + +import pytest +from exasol_bucketfs_utils_python.bucketfs_factory import BucketFSFactory +from exasol_udf_mock_python.column import Column +from exasol_udf_mock_python.connection import Connection +from exasol_udf_mock_python.mock_meta_data import MockMetaData + +from tests.unit_tests.utils_for_udf_tests import create_mock_exa_environment, create_mock_udf_context +from tests.unit_tests.udfs.base_model_dummy_implementation import DummyImplementationUDF +from exasol_transformers_extension.utils.huggingface_hub_bucketfs_model_transfer import ModelFactoryProtocol +from tests.utils.mock_cast import mock_cast + + +def create_mock_metadata() -> MockMetaData: + def udf_wrapper(): + pass + + meta = MockMetaData( + script_code_wrapper_function=udf_wrapper, + input_type="SET", + input_columns=[ + Column("device_id", int, "INTEGER"), + Column("model_name", str, "VARCHAR(2000000)"), + Column("sub_dir", str, "VARCHAR(2000000)"), + Column("bucketfs_conn", str, "VARCHAR(2000000)"), + Column("token_conn", str, "VARCHAR(2000000)"), + ], + output_type="EMITS", + output_columns=[ + Column("model_name", str, "VARCHAR(2000000)"), + Column("sub_dir", str, "VARCHAR(2000000)"), + Column("bucketfs_conn", str, "VARCHAR(2000000)"), + Column("token_conn", str, "VARCHAR(2000000)"), + Column("answer", bool, "BOOLEAN"), + Column("score", str, "DOUBLE"), + Column("error_message", str, "VARCHAR(2000000)") + ] + ) + return meta + + +@pytest.mark.parametrize("description, bucketfs_conn_name, bucketfs_conn ," + "sub_dir, model_name", [ + ("all given", "test_bucketfs_con_name", Connection(address=f"file:///test"), + "test_subdir", "test_model") +]) +def test_model_downloader_all_parameters(description, bucketfs_conn_name, bucketfs_conn, sub_dir, model_name): + mock_base_model_factory: Union[ModelFactoryProtocol, MagicMock] = create_autospec(ModelFactoryProtocol) + mock_tokenizer_factory: Union[ModelFactoryProtocol, MagicMock] = create_autospec(ModelFactoryProtocol) + + mock_bucketfs_factory: Union[BucketFSFactory, MagicMock] = create_autospec(BucketFSFactory) + mock_bucketfs_locations = [Mock()] + mock_cast(mock_bucketfs_factory.create_bucketfs_location).side_effect = mock_bucketfs_locations + + input_data = [ + ( + 1, + model_name, + sub_dir, + bucketfs_conn_name, + '' + ) + ] + mock_meta = create_mock_metadata() + mock_exa = create_mock_exa_environment( + [bucketfs_conn_name], + [bucketfs_conn], + mock_meta, + '', + None) + mock_ctx = create_mock_udf_context(input_data, mock_meta) + + udf = DummyImplementationUDF(exa=mock_exa, + base_model=mock_base_model_factory, + tokenizer=mock_tokenizer_factory) + udf.run(mock_ctx) + res = mock_ctx.output + # check if no errors + assert res[0][-1] is None and len(res[0]) == len(mock_meta.output_columns) + + +@pytest.mark.parametrize("description, bucketfs_conn_name, bucketfs_conn ," + "sub_dir, model_name", [ + ("all null", '', None, None, None), + ("model name missing", "test_bucketfs_con_name", Connection(address=f"file:///test"), + "test_subdir", None), + ("bucketfs_conn missing", None, None, + "test_subdir", "test_model"), + ("sub_dir missing", "test_bucketfs_con_name", Connection(address=f"file:///test"), + None, "test_model"), + ("model_name missing", "test_bucketfs_con_name", Connection(address=f"file:///test"), + "test_subdir", None) +]) +def test_model_downloader_missing_parameters(description, bucketfs_conn_name, bucketfs_conn, sub_dir, model_name): + mock_base_model_factory: Union[ModelFactoryProtocol, MagicMock] = create_autospec(ModelFactoryProtocol) + mock_tokenizer_factory: Union[ModelFactoryProtocol, MagicMock] = create_autospec(ModelFactoryProtocol) + + mock_bucketfs_factory: Union[BucketFSFactory, MagicMock] = create_autospec(BucketFSFactory) + mock_bucketfs_locations = [Mock()] + mock_cast(mock_bucketfs_factory.create_bucketfs_location).side_effect = mock_bucketfs_locations + + input_data = [ + ( + 1, + model_name, + sub_dir, + bucketfs_conn_name, + '' + ), + ( + 1, + model_name, + sub_dir, + bucketfs_conn_name, + '' + ) + ] + mock_meta = create_mock_metadata() + mock_exa = create_mock_exa_environment( + [bucketfs_conn_name], + [bucketfs_conn], + mock_meta, + '', + None) + mock_ctx = create_mock_udf_context(input_data, mock_meta) + + udf = DummyImplementationUDF(exa=mock_exa, + base_model=mock_base_model_factory.side_effect, + tokenizer=mock_tokenizer_factory.side_effect) + + udf.run(mock_ctx) + res = mock_ctx.output + print(res) + error_field = res[0][-1] + expected_error_start = f"For each model model_name, bucketfs_conn and sub_dir need to be provided. " \ + f"Found model_name = {model_name}," + expected_error_end = f" sub_dir = {sub_dir}" + assert error_field is not None and len(res[0]) == len(mock_meta.output_columns) + assert expected_error_start in error_field and expected_error_end in error_field \ No newline at end of file diff --git a/tests/unit_tests/udfs/test_model_downloader_udf.py b/tests/unit_tests/udfs/test_model_downloader_udf.py index bb629958..65295930 100644 --- a/tests/unit_tests/udfs/test_model_downloader_udf.py +++ b/tests/unit_tests/udfs/test_model_downloader_udf.py @@ -6,11 +6,9 @@ from exasol_bucketfs_utils_python.bucketfs_factory import BucketFSFactory from exasol_udf_mock_python.column import Column from exasol_udf_mock_python.connection import Connection -from exasol_udf_mock_python.group import Group -from exasol_udf_mock_python.mock_context import MockContext -from exasol_udf_mock_python.mock_exa_environment import MockExaEnvironment from exasol_udf_mock_python.mock_meta_data import MockMetaData +from tests.unit_tests.utils_for_udf_tests import create_mock_exa_environment, create_mock_udf_context from exasol_transformers_extension.udfs.models.model_downloader_udf import \ ModelDownloaderUDF from exasol_transformers_extension.utils.huggingface_hub_bucketfs_model_transfer import ModelFactoryProtocol, \ @@ -41,30 +39,6 @@ def udf_wrapper(): return meta -def create_mock_udf_context(input_data: List[Tuple[Any, ...]], mock_meta: MockMetaData) -> MockContext: - mock_ctx = MockContext( - input_groups=iter([Group(input_data)]), - metadata=mock_meta, - ) - mock_ctx._next_group() - return mock_ctx - - -def create_mock_exa_environment( - bfs_conn_name: List[str], - bucketfs_connections: List[Connection], - mock_meta: MockMetaData, - token_conn_name: str, - token_conn_obj: Connection) -> MockExaEnvironment: - connections_dict = {k: v for k, v in zip(bfs_conn_name, bucketfs_connections)} - connections_dict[token_conn_name] = token_conn_obj - mock_exa = MockExaEnvironment( - metadata=mock_meta, - connections=connections_dict - ) - return mock_exa - - @pytest.mark.parametrize("count", list(range(1, 10))) @pytest.mark.parametrize("description, token_conn_name ,token_conn_obj, expected_token", [ ('without token', '', None, False), @@ -130,7 +104,7 @@ def test_model_downloader(description, count, token_conn_name, token_conn_obj, e call(url=f'file:///test{i}', user=None, pwd=None) for i in range(count) ]) - assert mock_ctx._output_groups[0].rows == [ + assert mock_ctx.output == [ ( f'{sub_directory_names[i]}/{base_model_names[i]}', str(mock_model_downloaders[i].upload_to_bucketfs()) diff --git a/tests/unit_tests/utils_for_udf_tests.py b/tests/unit_tests/utils_for_udf_tests.py new file mode 100644 index 00000000..44b64500 --- /dev/null +++ b/tests/unit_tests/utils_for_udf_tests.py @@ -0,0 +1,29 @@ +from typing import Any, Tuple, List + +from exasol_udf_mock_python.mock_context import StandaloneMockContext, MockContext +from exasol_udf_mock_python.connection import Connection +from exasol_udf_mock_python.mock_exa_environment import MockExaEnvironment +from exasol_udf_mock_python.mock_meta_data import MockMetaData + + +def create_mock_udf_context(input_data: List[Tuple[Any, ...]], mock_meta: MockMetaData) -> StandaloneMockContext: + mock_ctx = StandaloneMockContext( + inp=input_data, + metadata=mock_meta, + ) + return mock_ctx + + +def create_mock_exa_environment( + bfs_conn_name: List[str], + bucketfs_connections: List[Connection], + mock_meta: MockMetaData, + token_conn_name: str, + token_conn_obj: Connection) -> MockExaEnvironment: + connections_dict = {k: v for k, v in zip(bfs_conn_name, bucketfs_connections)} + connections_dict[token_conn_name] = token_conn_obj + mock_exa = MockExaEnvironment( + metadata=mock_meta, + connections=connections_dict + ) + return mock_exa \ No newline at end of file