README.md

IQ-TREE2 container

Main tool : iqtree2

Full documentation: https://github.com/rrwick/Polypolish/wiki

| Efficient and versatile phylogenomic software by maximum likelihood

Example Usage

An example phylip file (IQ-TREE2 also supports other file formats such as FASTA, NEXUS, CLUSTALW)

7 28
Frog       AAATTTGGTCCTGTGATTCAGCAGTGAT
Turtle     CTTCCACACCCCAGGACTCAGCAGTGAT
Bird       CTACCACACCCCAGGACTCAGCAGTAAT
Human      CTACCACACCCCAGGAAACAGCAGTGAT
Cow        CTACCACACCCCAGGAAACAGCAGTGAC
Whale      CTACCACGCCCCAGGACACAGCAGTGAT
Mouse      CTACCACACCCCAGGACTCAGCAGTGAT

Can be aligned with the following command:

iqtree2 -s /iqtree-2.2.2.6-Linux/example.phy --redo