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release.yml
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name: MODFLOW 6 release
on:
# workflow_call event lets this workflow be called either
# from this repo or the nightly build repo for dev builds
workflow_call:
inputs:
approve:
description: 'Approve the release, modifying disclaimer language to indicate the distribution has been reviewed. If false, disclaimers & version strings indicate preliminary/provisional status.'
required: false
type: boolean
default: false
branch:
description: 'Branch to release from.'
required: true
type: string
compiler_toolchain:
description: 'Compiler toolchain to use. For supported options see https://github.com/MODFLOW-USGS/modflow6/blob/develop/DEVELOPER.md#compiler-compatibility.'
required: false
type: string
default: 'intel-classic'
compiler_version:
description: 'Compiler version to use. For supported options see https://github.com/MODFLOW-USGS/modflow6/blob/develop/DEVELOPER.md#compiler-compatibility.'
required: false
type: string
default: '2021.7'
developmode:
description: 'Build binaries in develop mode. If false, IDEVELOPMODE is set to 0.'
required: false
type: boolean
default: true
full:
description: 'Build a full distribution containing sources, examples, and all documentation. If false, the distribution contains only binaries, mf6io, release notes, and code.json.'
required: false
type: boolean
default: false
linux_version:
description: 'Linux runner image to build binaries on.'
required: false
type: string
default: 'ubuntu-22.04'
run_tests:
description: Run tests after building binaries.'
required: false
type: boolean
default: true
version:
description: 'Version number to use for release.'
required: true
type: string
models:
description: 'Models to include in the release documentation'
required: false
type: string
outputs:
version:
description: 'Version number used for release'
value: ${{ jobs.build.outputs.version }}
distname:
description: 'Distribution name used for release'
value: ${{ jobs.build.outputs.distname }}
env:
PIXI_BETA_WARNING_OFF: true
jobs:
build:
name: Build binaries (${{ matrix.os }}, extended=${{ matrix.extended }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
include:
- os: ${{ inputs.linux_version }}
compiler: ${{ inputs.compiler_toolchain }}
version: ${{ inputs.compiler_version }}
optimization: 2
extended: false
- os: macos-13
compiler: ${{ inputs.compiler_toolchain }}
version: ${{ inputs.compiler_version }}
optimization: 2
extended: false
- os: macos-14
compiler: gcc
version: 13
optimization: 1
extended: false
- os: windows-2022
compiler: ${{ inputs.compiler_toolchain }}
version: ${{ inputs.compiler_version }}
optimization: 2
extended: false
- os: windows-2022
compiler: intel-classic
version: "2021.7"
optimization: 2
extended: true
defaults:
run:
shell: bash -l {0}
outputs:
version: ${{ steps.set_version.outputs.version }}
distname: ${{ steps.set_version.outputs.distname }}
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
repository: ${{ github.repository_owner }}/modflow6
path: modflow6
ref: ${{ inputs.branch }}
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Install additional netcdf testing packages
working-directory: modflow6
run: pixi run pip install xugrid xarray netcdf4
- name: Setup Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: modflow6/environment.yml
cache-downloads: true
cache-environment: true
init-shell: >-
bash
powershell
- name: Setup ${{ matrix.compiler }} ${{ matrix.version }}
if: (!(runner.os == 'Windows' && matrix.extended))
id: setup-fortran
uses: fortran-lang/setup-fortran@v1
with:
compiler: ${{ matrix.compiler }}
version: ${{ matrix.version }}
- name: Set version number
id: set_version
run: |
# distribution name format is 'mf<major.minor.patch[label]>'
distname="mf${{ inputs.version }}"
# set step outputs and environment variables
echo "version=${{ inputs.version }}" >> "$GITHUB_OUTPUT"
echo "VERSION=${{ inputs.version }}" >> "$GITHUB_ENV"
echo "distname=$distname" >> "$GITHUB_OUTPUT"
echo "DISTNAME=$distname" >> "$GITHUB_ENV"
- name: Update version
id: update_version
working-directory: modflow6/distribution
run: |
ver="${{ steps.set_version.outputs.version }}"
cmd="python update_version.py -v $ver"
if [[ "${{ inputs.approve }}" == "true" ]]; then
cmd="$cmd --approve"
fi
if [[ "${{ inputs.developmode }}" == "false" ]]; then
cmd="$cmd --releasemode"
fi
eval "$cmd"
- name: Get OS tag
id: ostag
run: |
ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
if [[ "${{ matrix.extended }}" == "true" ]]; then
ostag="${ostag}ext"
fi
echo "ostag=$ostag" >> $GITHUB_OUTPUT
# for statically linked gfortran ARM mac build
- name: Hide dylibs (macOS)
if: matrix.os == 'macos-14'
run: |
version="${{ matrix.version }}"
libpath="/opt/homebrew/opt/gcc@$version/lib/gcc/$version"
mv $libpath/libgfortran.5.dylib $libpath/libgfortran.5.dylib.bak
mv $libpath/libquadmath.0.dylib $libpath/libquadmath.0.dylib.bak
- name: Set LDFLAGS (macOS)
if: runner.os == 'macOS'
run: |
os_ver=$(sw_vers -productVersion | cut -d'.' -f1)
if (( "$os_ver" > 12 )); then
ldflags="$LDFLAGS -Wl,-ld_classic"
echo "LDFLAGS=$ldflags" >> $GITHUB_ENV
fi
- name: Build binaries
if: (!(runner.os == 'Windows' && matrix.extended))
working-directory: modflow6
run: |
meson setup builddir --prefix=$(pwd) --libdir=bin -Doptimization=${{ matrix.optimization }}
meson install -C builddir
meson test --verbose --no-rebuild -C builddir
- name: Check architecture (macOS)
working-directory: modflow6/bin
if: runner.os == 'macOS'
run: |
otool -L mf6
lipo -info mf6
- name: Build binaries (Windows)
if: runner.os == 'Windows' && matrix.extended && !inputs.run_tests
uses: ./modflow6/.github/actions/build-extended-win
- name: Build and test binaries (Windows)
if: runner.os == 'Windows' && matrix.extended && inputs.run_tests && inputs.developmode
uses: ./modflow6/.github/actions/test-extended-win
- name: Build and test binaries (Windows)
if: runner.os == 'Windows' && matrix.extended && inputs.run_tests && !inputs.developmode
uses: ./modflow6/.github/actions/test-extended-win
env:
MARKERS: not developmode
- name: Copy deps to bin dir
if: runner.os == 'Windows' && matrix.extended
working-directory: modflow6/bin
shell: cmd
run: |
:: copy dependencies
copy "C:\Windows\System32\ucrtbase.dll" .
copy "C:\Windows\System32\msvcrt.dll" .
copy "C:\Windows\System32\msvcp_win.dll" .
copy "C:\Windows\SYSTEM32\MSVCP140.dll" .
copy "C:\Windows\SYSTEM32\VCRUNTIME140.dll" .
copy "C:\Windows\SYSTEM32\VCRUNTIME140_1.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\compiler\latest\bin\libifcoremd.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\compiler\latest\bin\libmmd.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_sequential.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_core.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_def.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_avx2.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_avx512.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mkl\latest\bin\mkl_mc3.2.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\bin\impi.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\opt\mpi\libfabric\bin\libfabric.dll" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\bin\mpiexec.exe" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\bin\hydra_bstrap_proxy.exe" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\bin\hydra_pmi_proxy.exe" .
copy "C:\Program Files (x86)\Intel\oneAPI\mpi\latest\bin\hydra_service.exe" .
copy "%GITHUB_WORKSPACE%\petsc\arch-mswin-c-opt\lib\libpetsc.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netCDF4.9.2-NC4-64\bin\hdf5.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netCDF4.9.2-NC4-64\bin\hdf5_hl.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netCDF4.9.2-NC4-64\bin\libcurl.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netCDF4.9.2-NC4-64\bin\netcdf.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netCDF4.9.2-NC4-64\bin\zlib1.dll" .
copy "%GITHUB_WORKSPACE%\netcdf\netcdf-fortran-4.6.1\build\fortran\netcdff.dll" .
:: remove rebuilt and downloaded dirs
if exist rebuilt rd /s /q rebuilt
if exist rebuilt rd /s /q downloaded
- name: Upload binaries
uses: actions/upload-artifact@v3
with:
name: bin-${{ steps.ostag.outputs.ostag }}
path: modflow6/bin
- name: Checkout modflow6-testmodels
if: inputs.run_tests == true && runner.os != 'Windows'
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-testmodels
path: modflow6-testmodels
- name: Checkout modflow6-examples
if: inputs.run_tests == true && runner.os != 'Windows'
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Update flopy
if: inputs.run_tests == true && runner.os != 'Windows'
working-directory: modflow6/autotest
run: python update_flopy.py
- name: Get executables
if: inputs.run_tests == true && runner.os != 'Windows'
working-directory: modflow6/autotest
env:
GITHUB_TOKEN: ${{ github.token }}
run: pytest -v --durations 0 get_exes.py
- name: Test modflow6
if: inputs.run_tests == true && runner.os != 'Windows'
working-directory: modflow6/autotest
env:
REPOS_PATH: ${{ github.workspace }}
run: |
markers="not large"
if [[ "${{ inputs.developmode }}" == "false" ]]; then
markers="$markers and not developmode"
fi
filters=""
if [[ "${{ matrix.os }}" == "macos-14" ]]; then
# comparison fails on macos-14 with optimization=1
filters="not test028_sfr_rewet"
fi
pytest -v -n auto --durations 0 -m "$markers" -k "$filters"
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-${{ matrix.os }}-${{ inputs.compiler_toolchain }}-${{ inputs.compiler_version }}
path: modflow6/autotest/.failed
# steps below run only on Linux to test distribution procedures, e.g.
# compiling binaries, building documentation
- name: Checkout usgslatex
if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/usgslatex
path: usgslatex
- name: Install TeX Live
if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
run: |
sudo apt-get update
sudo apt install texlive-science \
texlive-latex-extra \
texlive-font-utils \
texlive-fonts-recommended \
texlive-fonts-extra
- name: Install USGS LaTeX style files and Univers font
if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
working-directory: usgslatex/usgsLaTeX
run: sudo ./install.sh --all-users
- name: Test distribution scripts
if: ${{ inputs.run_tests == true }}
working-directory: modflow6/distribution
env:
GITHUB_TOKEN: ${{ github.token }}
run: pytest -v --durations 0
docs:
name: Build docs
needs: build
runs-on: ubuntu-22.04
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
repository: ${{ github.repository_owner }}/modflow6
path: modflow6
ref: ${{ inputs.branch }}
- name: Checkout modflow6-examples
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Checkout usgslatex
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/usgslatex
path: usgslatex
- name: Install TeX Live
run: |
sudo apt-get update
sudo apt install texlive-science \
texlive-latex-extra \
texlive-font-utils \
texlive-fonts-recommended \
texlive-fonts-extra
- name: Install USGS LaTeX style files and Univers font
working-directory: usgslatex/usgsLaTeX
run: sudo ./install.sh --all-users
- name: Setup Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: modflow6/environment.yml
cache-downloads: true
cache-environment: true
- name: Setup ${{ inputs.compiler_toolchain }} ${{ inputs.compiler_version }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: ${{ inputs.compiler_toolchain }}
version: ${{ inputs.compiler_version }}
- name: Update version
id: update_version
working-directory: modflow6/distribution
run: |
ver="${{ needs.build.outputs.version }}"
cmd="python update_version.py -v $ver"
if [[ "${{ inputs.approve }}" == "true" ]]; then
cmd="$cmd --approve"
fi
if [[ "${{ inputs.developmode }}" == "false" ]]; then
cmd="$cmd --releasemode"
fi
eval "$cmd"
- name: Update FloPy classes
working-directory: modflow6/autotest
run: python update_flopy.py
- name: Get OS tag
id: ostag
run: |
ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
echo "ostag=$ostag" >> $GITHUB_OUTPUT
- name: Download pre-built binaries
uses: actions/download-artifact@v3
with:
name: bin-${{ steps.ostag.outputs.ostag }}
path: bin
# execute permissions may not have survived artifact upload/download
- name: Set executable permissions
working-directory: modflow6-examples/etc
run: |
chmod +x "${{ github.workspace }}/bin/mf6"
chmod +x "${{ github.workspace }}/bin/mf5to6"
chmod +x "${{ github.workspace }}/bin/zbud6"
- name: Install dependencies for building models
if: inputs.full == true
working-directory: modflow6-examples/etc
env:
GITHUB_TOKEN: ${{ github.token }}
run: |
pip install -r requirements.pip.txt
echo "${{ github.workspace }}/bin" >> $GITHUB_PATH
get-modflow "${{ github.workspace }}/bin" --subset mf2005,triangle,gridgen
- name: Build example models
if: inputs.full == true
working-directory: modflow6-examples/autotest
run: |
models="${{ inputs.models }}"
pytest -v -n auto test_scripts.py --init -k "${models//,/ or }"
- name: Collect deprecations
working-directory: modflow6/doc/mf6io/mf6ivar
run: |
python deprecations.py
cat md/deprecations.md
- name: Upload deprecations
uses: actions/upload-artifact@v3
with:
name: deprecations
path: modflow6/doc/mf6io/mf6ivar/md/deprecations.md
- name: Build MF6IO files from DFNs
working-directory: modflow6/doc/mf6io/mf6ivar
run: python mf6ivar.py
- name: Build documentation
env:
# this step is lazy about building the mf6 examples PDF document, first
# trying to download a prebuilt PDF from MODFLOW-USGS/modflow6-examples,
# so it needs a GITHUB_TOKEN.
GITHUB_TOKEN: ${{ github.token }}
run: |
mkdir -p "${{ needs.build.outputs.distname }}/doc"
cmd="python modflow6/distribution/build_docs.py -b bin -o doc"
models="${{ inputs.models }}"
if [ -n "$models" ]; then
cmd="$cmd -m ${models//,/ -m }"
fi
if [[ "${{ inputs.full }}" == "true" ]]; then
cmd="$cmd --full"
fi
eval "$cmd"
mv "doc/ReleaseNotes.pdf" "doc/release.pdf"
- name: Upload documentation artifact
uses: actions/upload-artifact@v3
with:
name: doc
path: doc
dist:
name: Build distribution (${{ matrix.os }})
needs:
- build
- docs
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
include:
- os: ubuntu-22.04
- os: macos-13
- os: macos-14
- os: windows-2022
extended: false
- os: windows-2022
extended: true
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
repository: ${{ github.repository_owner }}/modflow6
path: modflow6
ref: ${{ inputs.branch }}
- name: Checkout modflow6-examples
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Setup Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: modflow6/environment.yml
cache-downloads: true
cache-environment: true
init-shell: >-
bash
powershell
- name: Setup ${{ inputs.compiler_toolchain }} ${{ inputs.compiler_version }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: ${{ inputs.compiler_toolchain }}
version: ${{ inputs.compiler_version }}
- name: Update version
id: update_version
working-directory: modflow6/distribution
run: |
ver="${{ needs.build.outputs.version }}"
cmd="python update_version.py -v $ver"
if [[ "${{ inputs.approve }}" == "true" ]]; then
cmd="$cmd --approve"
fi
if [[ "${{ inputs.developmode }}" == "false" ]]; then
cmd="$cmd --releasemode"
fi
eval "$cmd"
- name: Get OS tag
id: ostag
run: |
ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
if [[ "${{ matrix.extended }}" == "true" ]]; then
ostag="${ostag}ext"
fi
echo "ostag=$ostag" >> $GITHUB_OUTPUT
- name: Download artifacts
uses: actions/download-artifact@v3
with:
path: ${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}
- name: Select artifacts
working-directory: ${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}
run: |
echo "selecting ${{ steps.ostag.outputs.ostag }} artifacts"
# remove dists for other systems
rm -rf ${{ needs.build.outputs.distname }}_*
# remove release notes
rm -rf release_notes
# rename dist bin directory
mv bin-${{ steps.ostag.outputs.ostag }} bin
# remove binaries for other systems
rm -rf bin-*
echo "dist directory contains:"
ls
- name: Build distribution
env:
GITHUB_TOKEN: ${{ github.token }}
run: |
# build distribution
distname="${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}"
cmd="python modflow6/distribution/build_dist.py -o $distname"
models="${{ inputs.models }}"
if [ -n "$models" ]; then
cmd="$cmd -m ${models//,/ -m }"
fi
if [[ "${{ inputs.full }}" == "true" ]]; then
cmd="$cmd --full"
fi
eval "$cmd"
# rename PDF documents
if [[ "${{ inputs.full }}" == "true" ]]; then
mv "$distname/doc/converter_mf5to6.pdf" "$distname/doc/mf5to6.pdf"
fi
- name: Zip distribution
if: runner.os != 'Windows'
run: |
distname="${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}"
if [[ "${{ inputs.full }}" == "true" ]]; then
zip -r $distname.zip \
$distname/bin \
$distname/src \
$distname/srcbmi \
$distname/doc \
$distname/examples \
$distname/make \
$distname/msvs \
$distname/utils \
$distname/code.json \
$distname/meson.build \
$distname/meson.options \
-x '*.DS_Store' \
-x '*libmf6.lib' \
-x '*idmloader*' \
-x '*obj_temp*' \
-x '*mod_temp*'
else
zip -r $distname.zip \
$distname/bin/* \
$distname/doc/mf6io.pdf \
$distname/doc/release.pdf \
$distname/code.json \
-x '*.DS_Store' \
-x '*libmf6.lib' \
-x '*idmloader*' \
-x '*obj_temp*' \
-x '*mod_temp*'
fi
- name: Zip distribution (Windows)
if: runner.os == 'Windows'
run: |
distname="${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}"
if [[ "${{ inputs.full }}" == "true" ]]; then
7z a -tzip $distname.zip \
$distname/bin \
$distname/src \
$distname/srcbmi \
$distname/doc \
$distname/examples \
$distname/make \
$distname/msvs \
$distname/utils \
$distname/code.json \
$distname/meson.build \
$distname/meson.options \
-xr!libmf6.lib \
-xr!idmloader \
-xr!obj_temp \
-xr!mod_temp
else
7z a -tzip $distname.zip \
$distname/bin/* \
$distname/doc/mf6io.pdf \
$distname/doc/release.pdf \
$distname/code.json \
-xr!libmf6.lib \
-xr!idmloader \
-xr!obj_temp \
-xr!mod_temp
fi
- name: Upload distribution
uses: actions/upload-artifact@v3
with:
name: "${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}"
path: "${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}.zip"
- name: Upload release notes
if: runner.os == 'Linux'
uses: actions/upload-artifact@v3
with:
name: release_notes
path: "${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}/doc/release.pdf"
- name: Check distribution
run: |
# unzip and validate the archive
distname="${{ needs.build.outputs.distname }}_${{ steps.ostag.outputs.ostag }}"
distfile="$distname.zip"
checkdir="check"
mkdir $checkdir
if [[ "$RUNNER_OS" == "Windows" ]]; then
7z x $distfile -o$checkdir
else
unzip $distfile -d $checkdir
fi
cmd="pytest -v -s modflow6/distribution/check_dist.py --path $checkdir/$distname"
if [[ "${{ inputs.approve }}" == "true" ]]; then
cmd="$cmd --approved"
fi
if [[ "${{ inputs.developmode }}" == "false" ]]; then
cmd="$cmd --releasemode"
fi
if [[ "${{ inputs.full }}" == "true" ]]; then
cmd="$cmd --full"
fi
eval "$cmd"