➜  sweep git:(current) ✗ make eval_mapquik REFNAME=chm13-chr1
mkdir -p newevals/chm13-chr1-a0.99-d1
/usr/bin/time -f "%U\t%M" -o newevals/chm13-chr1-a0.99-d1/mapquik.time mapquik newevals/reads-chm13-chr1-a0.99-d1.fa --reference newevals/chm13-chr1.fa --threads 1 -p newevals/chm13-chr1-a0.
99-d1/mapquik | tee newevals/chm13-chr1-a0.99-d1/mapquik.log
Input file: newevals/reads-chm13-chr1-a0.99-d1.fa
Format: FASTA
Reference file: newevals/chm13-chr1.fa
Format: FASTA
Warning: Using default k value (5).
Warning: Using default l value (31).
Warning: Using default buffer size (1X).
Warning: Using default queue length (200).
Warning: Using default density value (1%).
Warning: Using default minimum chain length (4).
Warning: Using default minimum number of matching seeds (11).
Warning: Using default maximum seed gap difference (2000).
Warning: No AVX-512 CPU found, falling back to scalar implementation
Using HPC ntHash, scalar
Indexed reference chr1: 3523116 k-min-mers.
Indexed 3415049 unique k-min-mers in 2.677979925s.
Mapped query sequences in 811.98297ms.
Total execution time: 3.717633867s
Maximum RSS: 3.8510666GB
paftools.js mapeval newevals/chm13-chr1-a0.99-d1/mapquik.paf | tee newevals/chm13-chr1-a0.99-d1/mapquik.eval
Q       60      5       5       1.000000000     5
Q       0       4135    4126    0.997826087     4140