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DepthOfCoverage.inputs.json
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DepthOfCoverage.inputs.json
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{
"DepthOfCoverageWorkflow.wes_or_wgs": "WGS",
"DepthOfCoverageWorkflow.bai": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/GIAB-NA12878-TruSeq-Exome.bam.bai",
"DepthOfCoverageWorkflow.gene_names": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/HGNC_genenames_20170518.txt",
"DepthOfCoverageWorkflow.ref_fasta": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/Homo_sapiens_assembly19.fasta",
"DepthOfCoverageWorkflow.roi_genes": [
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi0.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene0.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi1.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene1.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi10.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene10.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi11.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene11.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi12.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene12.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi13.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene13.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi131.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene131.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi14.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene14.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi15.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene15.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi16.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene16.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi17.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene17.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi18.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene18.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi19.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene19.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi2.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene2.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi20.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene20.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi21.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene21.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi22.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene22.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi23.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene23.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi24.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene24.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi25.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene25.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi26.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene26.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi27.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene27.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi29.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene29.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi3.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene3.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi30.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene30.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi31.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene31.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi32.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene32.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi33.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene33.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi34.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene34.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi39.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene39.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi4.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene4.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi41.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene41.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi45.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene45.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi48.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene48.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi49.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene49.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi5.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene5.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi51.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene51.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi52.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene52.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi53.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene53.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi54.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene54.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi55.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene55.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi58.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene58.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi6.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene6.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi68.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene68.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi7.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene7.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi72.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene72.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi73.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene73.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi75.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene75.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi77.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene77.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi8.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene8.txt" },
{ "roi_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/roi9.bed", "ref_gene": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi_splitoverlap/refgene9.txt" }
],
"DepthOfCoverageWorkflow.roi_all_bed": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/clinical_roi.bed",
"DepthOfCoverageWorkflow.ref_dict": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/Homo_sapiens_assembly19.dict",
"DepthOfCoverageWorkflow.bam": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/GIAB-NA12878-TruSeq-Exome.bam",
"DepthOfCoverageWorkflow.ref_fasta_index": "gs://fc-secure-0c24dcf0-4747-4f4b-9b0c-6e2a956b3bcb/DepthOfCoverageTestData/Homo_sapiens_assembly19.fasta.fai",
"DepthOfCoverageWorkflow.sample_name": "NA12878"
}