emapper hits but no annotations

[nicolettacommins]

I'm running eggnog-mapper on a protein fasta file, and I get output in the .hits and .seed_orthologs files, but the .annotations file is empty and says "0 queries scanned."

I'm using the command:
emapper.py --override --itype proteins -i proteins.txt --tax_scope Bacteria --pfam_realign realign --go_evidence all --output_dir my/output/dir -o my_outfile --cpu 8

With the following example input (the first couple of queries from my fasta file):
proteins.txt

And my log file:
MGH35.log

I'm using emapper-2.1.12 with DB version 5.0.2

I think this is a bit different from the previous issue here: https://github.com/eggnogdb/eggnog-mapper/issues/287 because I am getting ortholog hits, but no annotations. I tried running my sample file through the web server and am waiting on the results. I'm a bit stuck because I don't see any informative errors, just Total hits processed: 0 Any help would be appreciated, thank you!