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Commits on Sep 21, 2017

• Made notebook illustrating periods and lengthscales

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• Made visual illustration of long period vs linear with foxj1

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Commits on Sep 20, 2017

• Added notebook with Anscombe transformation

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Commits on Aug 31, 2017

• Added demonstration of Anscombes transformation

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Commits on May 25, 2017

• Added model probabilities to all plots

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Commits on May 24, 2017

• Visualized model selection probability

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  d21826a

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• Added model probability estimation to model selection

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  febeb87

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• Remade FSV plots

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Commits on May 23, 2017

• Updated SF results

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  73da5bb

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• Update MOB results

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Commits on May 22, 2017

• Update BC results

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  c404031

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• total count_s_ in more exps

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• total count_s_ in BC

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  70047c4

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• total count in BC

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  7298041

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• Annotated Moffit cell proliferation genes in FSV-pval plot

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  aea28ab

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• Made plot option to mark out extra covariates

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  b033032

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• Add total count as pseudogene for visualisation

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  52e3033

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• Regress out total_count rather than cytoplasmArea

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  82cc6dd

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Commits on May 17, 2017

• Counted MERFISH Blanks

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  c3ae3e5

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• Added GO term analysis

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Commits on May 14, 2017

• Made pvalue vs HVG comparisons

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  121b0e4

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Commits on May 13, 2017

• Finalize alt factors plots

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Commits on May 12, 2017

• Changed how to plot alt factors

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  230ccdb

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• Updated frog figure

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  339866f

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• Added module with plot commands, scale points by standard error

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  906f5a9

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• Added helper script to rerun analysis

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  3d20633

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Commits on May 11, 2017

• Make standard errors for FSV

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  8ad8f9a

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• Added standard error notebook

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  84ce33d

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• Report d2 llr / d delta for standard error

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  aedd9a0

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• Give up on priors

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Commits on May 8, 2017

• Check boundary point after gradient based optimization

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• Had forgot to add the SeqFISH analysis script

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Commits on May 7, 2017

• Refined delta grid search strategy

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  1b90e74

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• Regularising log_delta with prior on non-spatial

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Commits on May 5, 2017

• Added spatial shuffling analysis to illustrate lack of false positives

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