diff --git a/Analysis/BreastCancer/spatial_BC_analysis.py b/Analysis/BreastCancer/spatial_BC_analysis.py index 3f43070..1dfec94 100644 --- a/Analysis/BreastCancer/spatial_BC_analysis.py +++ b/Analysis/BreastCancer/spatial_BC_analysis.py @@ -25,7 +25,7 @@ def main(): res = NaiveDE.regress_out(sample_info, dfm.T, 'np.log(total_counts)').T # Add total_count as pseudogene for reference - res['log_total_count'] = np.log(sample_info['total_count']) + res['log_total_count'] = np.log(sample_info['total_counts']) results = SpatialDE.run(X, res)