From 56b185f786701ab6f2665ca8d255bfb979306479 Mon Sep 17 00:00:00 2001 From: Nathan Layman Date: Sun, 8 Dec 2024 00:02:15 -0800 Subject: [PATCH] Fix annoying modis bundle_request dupe bug --- R/submit_modis_ndvi_bundle_request.R | 9 ++- _targets.R | 5 ++ _targets/meta/meta | 92 ++++++++++++++-------------- 3 files changed, 58 insertions(+), 48 deletions(-) diff --git a/R/submit_modis_ndvi_bundle_request.R b/R/submit_modis_ndvi_bundle_request.R index 8f9c5db..6495a8b 100644 --- a/R/submit_modis_ndvi_bundle_request.R +++ b/R/submit_modis_ndvi_bundle_request.R @@ -56,12 +56,17 @@ submit_modis_ndvi_bundle_request <- function(modis_ndvi_token, } message(" ") - bundle_response <- httr::GET(paste("https://appeears.earthdatacloud.nasa.gov/api/bundle/", task_id, sep = ""), httr::add_headers(Authorization = modis_ndvi_token)) + bundle_response <- httr::GET(paste("https://appeears.earthdatacloud.nasa.gov/api/bundle/", task_id, sep = ""), + httr::add_headers(Authorization = modis_ndvi_token)) + bundle_response <- jsonlite::fromJSON(jsonlite::toJSON(httr::content(bundle_response))) |> bind_cols() |> filter(file_type == "tif", grepl("NDVI", file_name)) |> mutate(year_doy = sub(".*doy(\\d+).*", "\\1", file_name), - start_date = as.Date(year_doy, format = "%Y%j")) # confirmed this is start date through manual download test + start_date = as.Date(year_doy, format = "%Y%j"), + year = year(start_date)) |> # confirmed this is start date through manual download test + arrange(start_date) |> + filter(year == modis_ndvi_task_id_continent$year) # Ensure we're not getting stuff outside the requested year which might lead to dupes # Return bundle response files return(bundle_response) diff --git a/_targets.R b/_targets.R index 7884470..c412cd3 100644 --- a/_targets.R +++ b/_targets.R @@ -443,10 +443,15 @@ dynamic_targets <- tar_plan( # when we go to forecast. Right now we're just using step function # interpolation where the NDVI value is constant for the entire 16-day period, # then it steps up or down to the next interval's NDVI value. + + # NCL: tarchetypes::tar_group_size(name = modis_ndvi_requests, size = 10, command = modis_ndvi_bundle_request |> arrange(start_date) |> + group_by(sha256) |> # Remove duplicate file requests + slice_max(created, n = 1) |> + ungroup() |> mutate(end_date = lead(start_date) - days(1), end_date = case_when( is.na(end_date) ~ start_date + 15, diff --git a/_targets/meta/meta b/_targets/meta/meta index aeda299..bb0ed91 100644 --- a/_targets/meta/meta +++ b/_targets/meta/meta @@ -1,5 +1,5 @@ name|type|data|command|depend|seed|path|time|size|bytes|format|repository|iteration|parent|children|seconds|warnings|error -.Random.seed|object|62ca248a0960b656||||||||||||||| +.Random.seed|object|d7da1ff51627bc91||||||||||||||| aggregate_augmented_data_by_adm|function|2315722e5d2c9d69||||||||||||||| 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