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Reanalysis comparison with observations for energy sector applications #187

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cbartucca opened this issue Sep 25, 2024 · 17 comments · May be fixed by #220
Open

Reanalysis comparison with observations for energy sector applications #187

cbartucca opened this issue Sep 25, 2024 · 17 comments · May be fixed by #220

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@cbartucca
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cbartucca commented Sep 25, 2024

Data Type

Reanalyses

Assessment Category

Validation

Dataset Name

reanalysis-era5-single-levels-monthly-means

Question Number

2

Workflow ID

eqctier3-01c68e35-a5a3-42ca-9424-d3def8a97b3c

Zipped Notebook

reanalysis-era5-monthly-single-levels_validatio_q02.zip

Environment

name: wp5
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - accessible-pygments=0.0.5=pyhd8ed1ab_0
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  - libarrow-dataset=17.0.0=h5888daf_13_cpu
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  - postgresql=16.4=hb2eb5c0_1
  - proj=9.4.1=h54d7996_1
  - prometheus_client=0.20.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.47=pyha770c72_0
  - properscoring=0.1=py_0
  - psutil=6.0.0=py311h9ecbd09_1
  - pthread-stubs=0.4=h36c2ea0_1001
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  - pure_eval=0.2.3=pyhd8ed1ab_0
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  - pyshp=2.3.1=pyhd8ed1ab_0
  - pyside6=6.7.2=py311hba19f1e_2
  - pysocks=1.7.1=pyha2e5f31_6
  - python=3.11.9=hb806964_0_cpython
  - python-dateutil=2.9.0=pyhd8ed1ab_0
  - python-dotenv=1.0.1=pyhd8ed1ab_0
  - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
  - python-json-logger=2.0.7=pyhd8ed1ab_0
  - python-tzdata=2024.1=pyhd8ed1ab_0
  - python_abi=3.11=5_cp311
  - pytz=2024.1=pyhd8ed1ab_0
  - pyyaml=6.0.2=py311h9ecbd09_1
  - pyzmq=26.2.0=py311h7deb3e3_2
  - qhull=2020.2=h434a139_5
  - qt6-main=6.7.2=hb12f9c5_5
  - rasterio=1.3.11=py311hfbe93a2_0
  - re2=2023.09.01=h7f4b329_2
  - readline=8.2=h8228510_1
  - referencing=0.35.1=pyhd8ed1ab_0
  - regionmask=0.12.1=pyhd8ed1ab_0
  - requests=2.32.3=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
  - rich=13.7.1=pyhd8ed1ab_0
  - rioxarray=0.17.0=pyhd8ed1ab_0
  - rpds-py=0.20.0=py311h9e33e62_1
  - s2n=1.5.2=h7b32b05_0
  - scikit-learn=1.5.1=py311hd632256_0
  - scipy=1.14.1=py311he1f765f_0
  - seaborn=0.13.2=hd8ed1ab_2
  - seaborn-base=0.13.2=pyhd8ed1ab_2
  - send2trash=1.8.3=pyh0d859eb_0
  - setuptools=73.0.1=pyhd8ed1ab_0
  - shapely=2.0.6=py311h9036bbf_1
  - shellingham=1.5.4=pyhd8ed1ab_0
  - simpervisor=1.0.0=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.2.1=ha2e4443_0
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snowballstemmer=2.2.0=pyhd8ed1ab_0
  - snuggs=1.4.7=pyhd8ed1ab_1
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
  - sparse=0.15.4=pyhd8ed1ab_0
  - spdlog=1.14.1=hed91bc2_1
  - sphinx=7.4.7=pyhd8ed1ab_0
  - sphinx-book-theme=1.1.3=pyhd8ed1ab_0
  - sphinx-comments=0.0.3=pyh9f0ad1d_0
  - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
  - sphinx-design=0.6.1=pyhd8ed1ab_1
  - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
  - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
  - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
  - sphinx-thebe=0.3.1=pyhd8ed1ab_0
  - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
  - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0
  - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0
  - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
  - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
  - sqlalchemy=2.0.34=py311h9ecbd09_0
  - sqlite=3.46.1=h9eae976_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.2=py311h18e1886_0
  - structlog=24.4.0=pyhd8ed1ab_0
  - tabulate=0.9.0=pyhd8ed1ab_1
  - tblib=3.0.0=pyhd8ed1ab_0
  - tenacity=9.0.0=pyhd8ed1ab_0
  - terminado=0.18.1=pyh0d859eb_0
  - threadpoolctl=3.5.0=pyhc1e730c_0
  - tiledb=2.25.0=h86fa3b2_11
  - tinycss2=1.3.0=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.12.1=pyhd8ed1ab_0
  - tornado=6.4.1=py311h9ecbd09_1
  - tqdm=4.66.5=pyhd8ed1ab_0
  - traitlets=5.14.3=pyhd8ed1ab_0
  - typer=0.12.5=pyhd8ed1ab_0
  - typer-slim=0.12.5=pyhd8ed1ab_0
  - typer-slim-standard=0.12.5=hd8ed1ab_0
  - types-python-dateutil=2.9.0.20240906=pyhd8ed1ab_0
  - typing-extensions=4.12.2=hd8ed1ab_0
  - typing_extensions=4.12.2=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzcode=2024b=hb9d3cd8_0
  - tzdata=2024a=h8827d51_1
  - uc-micro-py=1.0.3=pyhd8ed1ab_0
  - udunits2=2.2.28=h40f5838_3
  - uri-template=1.3.0=pyhd8ed1ab_0
  - uriparser=0.9.8=hac33072_0
  - urllib3=2.2.2=pyhd8ed1ab_1
  - wayland=1.23.1=h3e06ad9_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - webcolors=24.8.0=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.8.0=pyhd8ed1ab_0
  - wheel=0.44.0=pyhd8ed1ab_0
  - xarray=2024.7.0=pyhd8ed1ab_0
  - xarraymannkendall=1.4.5=pyhd8ed1ab_0
  - xcb-util=0.4.1=hb711507_2
  - xcb-util-cursor=0.1.4=h4ab18f5_2
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xerces-c=3.2.5=h666cd97_1
  - xesmf=0.8.7=pyhd8ed1ab_0
  - xhistogram=0.3.2=pyhd8ed1ab_0
  - xkeyboard-config=2.42=h4ab18f5_0
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.1.1=hd590300_0
  - xorg-libsm=1.2.4=h7391055_0
  - xorg-libx11=1.8.9=hb711507_1
  - xorg-libxau=1.0.11=hd590300_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h0b41bf4_2
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h4bc722e_1
  - xorg-libxrender=0.9.11=hd590300_0
  - xorg-libxtst=1.2.5=h4bc722e_0
  - xorg-libxxf86vm=1.1.5=h4bc722e_1
  - xorg-recordproto=1.14.2=h7f98852_1002
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h0b41bf4_1003
  - xorg-xproto=7.0.31=h7f98852_1007
  - xskillscore=0.0.26=pyhd8ed1ab_0
  - xyzservices=2024.9.0=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.11.0=py311h9ecbd09_0
  - zarr=2.18.3=pyhd8ed1ab_0
  - zeromq=4.3.5=ha4adb4c_5
  - zict=3.0.0=pyhd8ed1ab_0
  - zipp=3.20.1=pyhd8ed1ab_0
  - zlib=1.3.1=h4ab18f5_1
  - zstandard=0.23.0=py311hbc35293_1
  - zstd=1.5.6=ha6fb4c9_0
  - pip:
      - alembic==1.13.2
      - c3s-eqc-automatic-quality-control==0.1.2.dev113+g12de045
      - cacholote==1.3.2
      - cgul==0.0.4
      - earthkit-geo==0.2.0
      - earthkit-meteo==0.1.1
      - eccodes==2.37.0
      - ecmwflibs==0.6.3
      - kaleido==0.2.1
      - lru-dict==1.3.0
      - mako==1.3.5
      - pymannkendall==1.4.3
      - sqlalchemy-utils==0.41.2
prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

No response

@malmans2
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The form says question number 1, the filename says number 2. Which one is the right one?

@cbartucca
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Ah, ok, didn't know if it was about this specific issue or what. If it is ment like the second notebook it is 2

@malmans2
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malmans2 commented Sep 25, 2024

I'm going to edit the form then. I don't know the exact meaning of the question number, it definitely guarantees unique names. Your colleagues at CNR should know more about it.

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/b0f14005d4a1dfbda50a8f1358d08e395fb6051c/Reanalyses/reanalysis_reanalysis-era5-single-levels-monthly-means_validation_q02.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

@cbartucca
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cbartucca commented Sep 25, 2024

Definetely I have to remove numbering from this notebook too

@cbartucca
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Ok, here we are

reanalysis-era5-monthly-single-levels_validation_q02.zip

While I'm at it, the notebook actually addresses both validation and uncertainty. Is there any way to make it appear in the name?

@malmans2
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The assessment categories provided by CNR are available here: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment?tab=readme-ov-file#naming-convention.

With the current design, you can only pick one category, so we would need to add another to cover this case. Note that this change would only affect the file name/URL; the Jupyter book shows the title.

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/b51d877dff27db1201b50935e47ed8761db91616/Reanalyses/reanalysis_reanalysis-era5-single-levels-monthly-means_validation_q02.ipynb

PREVIEW

@cbartucca
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Ok, thank you, I think in this case it will be fine to leave it as it is.

@cbartucca
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The same here, the notebook with one figure parameter

reanalysis-era5-monthly-single-levels_validation+uncertainties_q02.zip

@cbartucca
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Thank you!

@crgoddard
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We want to merge this one into the main branch for publication. I'm just not sure what the formatting here is trying to achieve:
image

Also for 'The HadISD'.

Then the only small issue is the level of the Methodology heading being that of the main title, causing:
image

The title fix I would be happy to make myself, but I don't know what was intended for the formatting fix.

@cbartucca
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Hi Chris, I have fixed what you mentioned. Here is the new notebook

reanalysis-era5-monthly-single-levels_validation+uncertainties_q02.zip

@malmans2 malmans2 reopened this Oct 10, 2024
@malmans2 malmans2 linked a pull request Oct 10, 2024 that will close this issue
@cbartucca
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Hi Mattia,

I noticed that the PREVIEW link points to 404 Page not found (I had reported this by replying to the e-mail but perhaps it was not the right channel). Can you do something about this?

Thank you

@malmans2
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My bad, I've been asked to re-open this issue and forgot to trigger the deployment. It should be working in a couple of minutes (let me know if you still see 404 in a few minutes).

I also added a few automatic checks to ensure the notebook is aligned with the latest template, and I noticed a minor issue. I had to fix the 'Use Case' heading, so here is the updated permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/23dce3831a59c20d3348238d165afb9c7d917eac/Reanalyses/reanalysis_reanalysis-era5-single-levels-monthly-means_validation_q02.ipynb

PREVIEW

@cbartucca
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cbartucca commented Oct 23, 2024

Yes it was working then, thank you. Same here please, I have made some changes and need a new permalink. Here is the notebook
reanalysis_reanalysis-era5-single-levels-monthly-means_validation_q02.zip

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3 participants