diff --git a/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/.project b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/.project
new file mode 100644
index 0000000000..b23a5c09f4
--- /dev/null
+++ b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/.project
@@ -0,0 +1,17 @@
+
+
+ org.eclipse.chemclipse.msd.converter.supplier.mmass.feature
+
+
+
+
+
+ org.eclipse.pde.FeatureBuilder
+
+
+
+
+
+ org.eclipse.pde.FeatureNature
+
+
diff --git a/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/build.properties b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/build.properties
new file mode 100644
index 0000000000..64f93a9f0b
--- /dev/null
+++ b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/build.properties
@@ -0,0 +1 @@
+bin.includes = feature.xml
diff --git a/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/feature.xml b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/feature.xml
new file mode 100644
index 0000000000..4672b65802
--- /dev/null
+++ b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mmass.feature/feature.xml
@@ -0,0 +1,34 @@
+
+
+
+
+ This is the mMass .msd file converter.
+
+
+
+ Copyright (c) 2022 Lablicate GmbH.
+
+
+
+ Copyright (c) 2022 Lablicate GmbH.
+
+All rights reserved. This program and the accompanying materials
+are made available under the terms of the Eclipse Public License
+v1.0
+which accompanies this distribution, and is available at
+http://www.eclipse.org/legal/epl-v10.html
+
+
+
+
+
diff --git a/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mzml.feature/feature.xml b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mzml.feature/feature.xml
index 20aa44334d..ccdbef37ae 100644
--- a/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mzml.feature/feature.xml
+++ b/chemclipse/features/org.eclipse.chemclipse.msd.converter.supplier.mzml.feature/feature.xml
@@ -1,9 +1,10 @@
+ provider-name="ChemClipse"
+ plugin="org.eclipse.chemclipse.feature.branding">
This is the mzML chromatogram converter.
diff --git a/chemclipse/features/org.eclipse.chemclipse.rcp.app.compilation.core.feature/feature.xml b/chemclipse/features/org.eclipse.chemclipse.rcp.app.compilation.core.feature/feature.xml
index d594fb0189..2aa0628326 100644
--- a/chemclipse/features/org.eclipse.chemclipse.rcp.app.compilation.core.feature/feature.xml
+++ b/chemclipse/features/org.eclipse.chemclipse.rcp.app.compilation.core.feature/feature.xml
@@ -3,7 +3,8 @@
id="org.eclipse.chemclipse.rcp.app.compilation.core.feature"
label="ChemClipse Core"
version="0.9.0.qualifier"
- provider-name="ChemClipse" plugin="org.eclipse.chemclipse.feature.branding">
+ provider-name="ChemClipse"
+ plugin="org.eclipse.chemclipse.feature.branding">
This is the ChemClipse core feature.
@@ -232,7 +233,7 @@ http://www.eclipse.org/legal/epl-v10.html
-
+
@@ -240,10 +241,10 @@ http://www.eclipse.org/legal/epl-v10.html
-
+
+ version="0.0.0"/>
+
+
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.classpath b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.classpath
new file mode 100644
index 0000000000..eca7bdba8f
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.classpath
@@ -0,0 +1,7 @@
+
+
+
+
+
+
+
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.gitignore b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.gitignore
new file mode 100644
index 0000000000..5e56e040ec
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.gitignore
@@ -0,0 +1 @@
+/bin
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.project b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.project
new file mode 100644
index 0000000000..40f683aa0c
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.project
@@ -0,0 +1,28 @@
+
+
+ org.eclipse.chemclipse.msd.converter.supplier.mmass
+
+
+
+
+
+ org.eclipse.jdt.core.javabuilder
+
+
+
+
+ org.eclipse.pde.ManifestBuilder
+
+
+
+
+ org.eclipse.pde.SchemaBuilder
+
+
+
+
+
+ org.eclipse.pde.PluginNature
+ org.eclipse.jdt.core.javanature
+
+
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.settings/org.eclipse.jdt.core.prefs b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.settings/org.eclipse.jdt.core.prefs
new file mode 100644
index 0000000000..0c68a61dca
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/.settings/org.eclipse.jdt.core.prefs
@@ -0,0 +1,7 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
+org.eclipse.jdt.core.compiler.compliance=1.8
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=1.8
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/META-INF/MANIFEST.MF b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/META-INF/MANIFEST.MF
new file mode 100644
index 0000000000..fc3df99cf5
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/META-INF/MANIFEST.MF
@@ -0,0 +1,22 @@
+Manifest-Version: 1.0
+Automatic-Module-Name: org.eclipse.chemclipse.msd.converter.supplier.mzml
+Eclipse-RegisterBuddy: org.eclipse.chemclipse.model, org.eclipse.chemclipse.msd.model
+Bundle-ManifestVersion: 2
+Bundle-Name: mMass Converter
+Bundle-SymbolicName: org.eclipse.chemclipse.msd.converter.supplier.mmass;singleton:=true
+Bundle-Version: 0.9.0.qualifier
+Bundle-Activator: org.eclipse.chemclipse.msd.converter.supplier.mmass.Activator
+Bundle-Vendor: ChemClipse
+Require-Bundle: org.eclipse.core.runtime,
+ org.eclipse.chemclipse.msd.converter;bundle-version="0.8.0",
+ org.eclipse.chemclipse.msd.model;bundle-version="0.8.0",
+ org.eclipse.chemclipse.logging;bundle-version="0.8.0",
+ org.eclipse.chemclipse.processing;bundle-version="0.8.0",
+ org.eclipse.chemclipse.converter;bundle-version="0.8.0",
+ org.eclipse.chemclipse.model;bundle-version="0.8.0",
+ org.eclipse.chemclipse.support;bundle-version="0.8.0",
+ org.apache.commons.codec;bundle-version="1.9.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Bundle-ActivationPolicy: lazy
+Import-Package: org.apache.commons.lang3.tuple;version="3.1.0",
+ org.eclipse.chemclipse.xxd.converter.supplier.io.exception
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/OSGI-INF/l10n/bundle_en.properties b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/OSGI-INF/l10n/bundle_en.properties
new file mode 100644
index 0000000000..597fd0bfba
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/OSGI-INF/l10n/bundle_en.properties
@@ -0,0 +1 @@
+#Properties file
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/build.properties b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/build.properties
new file mode 100644
index 0000000000..3e5f9ad7d0
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/build.properties
@@ -0,0 +1,6 @@
+source.. = src/
+output.. = bin/
+bin.includes = META-INF/,\
+ .,\
+ plugin.xml,\
+ OSGI-INF/
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/plugin.xml b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/plugin.xml
new file mode 100644
index 0000000000..3a47075bca
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/plugin.xml
@@ -0,0 +1,18 @@
+
+
+
+
+
+
+
+
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/Activator.java b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/Activator.java
new file mode 100644
index 0000000000..0cd9c2ec5f
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/Activator.java
@@ -0,0 +1,43 @@
+/*******************************************************************************
+ * Copyright (c) 2013, 2022 Lablicate GmbH.
+ *
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.msd.converter.supplier.mmass;
+
+import org.osgi.framework.BundleActivator;
+import org.osgi.framework.BundleContext;
+
+public class Activator implements BundleActivator {
+
+ private static BundleContext context;
+
+ public static BundleContext getContext() {
+
+ return context;
+ }
+
+ /*
+ * (non-Javadoc)
+ * @see org.osgi.framework.BundleActivator#start(org.osgi.framework.BundleContext)
+ */
+ public void start(BundleContext bundleContext) throws Exception {
+
+ Activator.context = bundleContext;
+ }
+
+ /*
+ * (non-Javadoc)
+ * @see org.osgi.framework.BundleActivator#stop(org.osgi.framework.BundleContext)
+ */
+ public void stop(BundleContext bundleContext) throws Exception {
+
+ Activator.context = null;
+ }
+}
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumExportConverter.java b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumExportConverter.java
new file mode 100644
index 0000000000..2083205138
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumExportConverter.java
@@ -0,0 +1,45 @@
+/*******************************************************************************
+ * Copyright (c) 2022 Lablicate GmbH.
+ *
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.msd.converter.supplier.mmass.converter;
+
+import java.io.File;
+
+import org.eclipse.chemclipse.msd.converter.massspectrum.AbstractMassSpectrumExportConverter;
+import org.eclipse.chemclipse.msd.model.core.IMassSpectra;
+import org.eclipse.chemclipse.msd.model.core.IScanMSD;
+import org.eclipse.chemclipse.processing.core.IProcessingInfo;
+import org.eclipse.chemclipse.processing.core.ProcessingInfo;
+import org.eclipse.core.runtime.IProgressMonitor;
+
+public class MassSpectrumExportConverter extends AbstractMassSpectrumExportConverter {
+
+ private static final String DESCRIPTION = "mMass .msd Mass Spectra Export Converter";
+
+ @Override
+ public IProcessingInfo convert(File file, IScanMSD massSpectrum, boolean append, IProgressMonitor monitor) {
+
+ return getProcessingInfo();
+ }
+
+ @Override
+ public IProcessingInfo convert(File file, IMassSpectra massSpectra, boolean append, IProgressMonitor monitor) {
+
+ return getProcessingInfo();
+ }
+
+ private IProcessingInfo getProcessingInfo() {
+
+ IProcessingInfo processingInfo = new ProcessingInfo<>();
+ processingInfo.addErrorMessage(DESCRIPTION, "It's not possible to export mass spectra as mMass .msd yet.");
+ return processingInfo;
+ }
+}
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumImportConverter.java b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumImportConverter.java
new file mode 100644
index 0000000000..e554f3c9a8
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumImportConverter.java
@@ -0,0 +1,62 @@
+/*******************************************************************************
+ * Copyright (c) 2022 Lablicate GmbH.
+ *
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.msd.converter.supplier.mmass.converter;
+
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+
+import org.eclipse.chemclipse.converter.exceptions.FileIsEmptyException;
+import org.eclipse.chemclipse.converter.exceptions.FileIsNotReadableException;
+import org.eclipse.chemclipse.logging.core.Logger;
+import org.eclipse.chemclipse.msd.converter.io.IMassSpectraReader;
+import org.eclipse.chemclipse.msd.converter.massspectrum.AbstractMassSpectrumImportConverter;
+import org.eclipse.chemclipse.msd.converter.supplier.mmass.converter.io.MassSpectrumReader;
+import org.eclipse.chemclipse.msd.model.core.IMassSpectra;
+import org.eclipse.chemclipse.processing.core.IProcessingInfo;
+import org.eclipse.core.runtime.IProgressMonitor;
+
+public class MassSpectrumImportConverter extends AbstractMassSpectrumImportConverter {
+
+ private static final Logger logger = Logger.getLogger(MassSpectrumImportConverter.class);
+ private static final String DESCRIPTION = "mMass .msd annotated Mass Spectrum Import";
+
+ @Override
+ public IProcessingInfo convert(File file, IProgressMonitor monitor) {
+
+ IProcessingInfo processingInfo = super.validate(file);
+ if(!processingInfo.hasErrorMessages()) {
+ try {
+ IMassSpectraReader massSpectraReader = new MassSpectrumReader();
+ IMassSpectra massSpectra = massSpectraReader.read(file, monitor);
+ if(massSpectra != null && massSpectra.size() > 0) {
+ processingInfo.setProcessingResult(massSpectra);
+ } else {
+ processingInfo.addErrorMessage(DESCRIPTION, "No mass spectra are stored." + file.getAbsolutePath());
+ }
+ } catch(FileNotFoundException e) {
+ logger.warn(e);
+ processingInfo.addErrorMessage(DESCRIPTION, "The file couldn't be found: " + file.getAbsolutePath());
+ } catch(FileIsNotReadableException e) {
+ logger.warn(e);
+ processingInfo.addErrorMessage(DESCRIPTION, "The file is not readable: " + file.getAbsolutePath());
+ } catch(FileIsEmptyException e) {
+ logger.warn(e);
+ processingInfo.addErrorMessage(DESCRIPTION, "The file is empty: " + file.getAbsolutePath());
+ } catch(IOException e) {
+ logger.warn(e);
+ processingInfo.addErrorMessage(DESCRIPTION, "Something has gone completely wrong: " + file.getAbsolutePath());
+ }
+ }
+ return processingInfo;
+ }
+}
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumMagicNumberMatcher.java b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumMagicNumberMatcher.java
new file mode 100644
index 0000000000..e8a0d7b5c4
--- /dev/null
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mmass/src/org/eclipse/chemclipse/msd/converter/supplier/mmass/converter/MassSpectrumMagicNumberMatcher.java
@@ -0,0 +1,45 @@
+/*******************************************************************************
+ * Copyright (c) 2022 Lablicate GmbH.
+ *
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contributors:
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.msd.converter.supplier.mmass.converter;
+
+import java.io.File;
+import java.io.FileReader;
+import java.io.IOException;
+
+import org.eclipse.chemclipse.converter.core.AbstractMagicNumberMatcher;
+import org.eclipse.chemclipse.converter.core.IMagicNumberMatcher;
+
+public class MassSpectrumMagicNumberMatcher extends AbstractMagicNumberMatcher implements IMagicNumberMatcher {
+
+ @Override
+ public boolean checkFileFormat(File file) {
+
+ boolean isValidFormat = false;
+ if(!file.exists()) {
+ return isValidFormat;
+ }
+ if(!checkFileExtension(file, ".msd")) {
+ return isValidFormat;
+ }
+ try (FileReader fileReader = new FileReader(file)) {
+ final char[] charBuffer = new char[60];
+ fileReader.read(charBuffer);
+ final String header = new String(charBuffer);
+ if(header.contains("= VendorIon.MIN_ABUNDANCE && intensity <= VendorIon.MAX_ABUNDANCE) {
+ double mz = AbstractIon.getIon(mzs[i]);
+ IVendorIon ion = new VendorIon(mz, intensity);
+ massSpectrum.addIon(ion);
+ }
+ } catch(AbundanceLimitExceededException e) {
+ logger.warn(e);
+ } catch(IonLimitExceededException e) {
+ logger.warn(e);
+ }
+ }
+ }
+
+ private void checkArray(NamedNodeMap attributes) {
+
+ if(!attributes.getNamedItem("compression").getTextContent().equals("zlib")) {
+ throw new UnsupportedOperationException("Only zlib compression is supported.");
+ }
+ if(!attributes.getNamedItem("endian").getTextContent().equals("little")) {
+ throw new UnsupportedOperationException("Only Little Endian is supported.");
+ }
+ if(!attributes.getNamedItem("precision").getTextContent().equals("32")) {
+ throw new UnsupportedOperationException("Only 32-bit precision is supported.");
+ }
+ }
+
+ private ByteBuffer decompress(byte[] binary) throws DataFormatException {
+
+ ByteBuffer byteBuffer = ByteBuffer.wrap(binary);
+ Inflater inflater = new Inflater();
+ inflater.setInput(byteBuffer.array());
+ byte[] byteArray = new byte[byteBuffer.capacity() * 10];
+ int decodedLength = inflater.inflate(byteArray);
+ byteBuffer = ByteBuffer.wrap(byteArray, 0, decodedLength);
+ byteBuffer.order(ByteOrder.LITTLE_ENDIAN);
+ return byteBuffer;
+ }
+
+ private float[] decodeFloatArray(ByteBuffer byteBuffer) {
+
+ FloatBuffer floatBuffer = byteBuffer.asFloatBuffer();
+ float[] values = new float[floatBuffer.capacity()];
+ for(int index = 0; index < floatBuffer.capacity(); index++) {
+ values[index] = floatBuffer.get(index);
+ }
+ return values;
+ }
+}
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml.ui/META-INF/MANIFEST.MF b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml.ui/META-INF/MANIFEST.MF
index 03122f3a6e..62a3d1535f 100644
--- a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml.ui/META-INF/MANIFEST.MF
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml.ui/META-INF/MANIFEST.MF
@@ -1,7 +1,7 @@
Manifest-Version: 1.0
Automatic-Module-Name: org.eclipse.chemclipse.msd.converter.supplier.mzml.ui
Bundle-ManifestVersion: 2
-Bundle-Name: Ui
+Bundle-Name: mzML UI
Bundle-SymbolicName: org.eclipse.chemclipse.msd.converter.supplier.mzml.ui;singleton:=true
Bundle-Version: 0.9.0.qualifier
Bundle-Activator: org.eclipse.chemclipse.msd.converter.supplier.mzml.ui.Activator
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/META-INF/MANIFEST.MF b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/META-INF/MANIFEST.MF
index d9153bd634..7a252bb6ea 100644
--- a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/META-INF/MANIFEST.MF
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/META-INF/MANIFEST.MF
@@ -2,7 +2,7 @@ Manifest-Version: 1.0
Automatic-Module-Name: org.eclipse.chemclipse.msd.converter.supplier.mzml
Eclipse-RegisterBuddy: org.eclipse.chemclipse.model, org.eclipse.chemclipse.msd.model
Bundle-ManifestVersion: 2
-Bundle-Name: Mzml
+Bundle-Name: mzML
Bundle-SymbolicName: org.eclipse.chemclipse.msd.converter.supplier.mzml;singleton:=true
Bundle-Version: 0.9.0.qualifier
Bundle-Activator: org.eclipse.chemclipse.msd.converter.supplier.mzml.Activator
diff --git a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/src/org/eclipse/chemclipse/msd/converter/supplier/mzml/converter/io/MassSpectrumWriter.java b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/src/org/eclipse/chemclipse/msd/converter/supplier/mzml/converter/io/MassSpectrumWriter.java
index dbf0ac3d26..e20fbb4e56 100644
--- a/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/src/org/eclipse/chemclipse/msd/converter/supplier/mzml/converter/io/MassSpectrumWriter.java
+++ b/chemclipse/plugins/org.eclipse.chemclipse.msd.converter.supplier.mzml/src/org/eclipse/chemclipse/msd/converter/supplier/mzml/converter/io/MassSpectrumWriter.java
@@ -1,5 +1,5 @@
/*******************************************************************************
- * Copyright (c) 2013, 2021 Lablicate GmbH.
+ * Copyright (c) 2013, 2022 Lablicate GmbH.
*
* All rights reserved.
* This program and the accompanying materials are made available under the
@@ -12,7 +12,6 @@
package org.eclipse.chemclipse.msd.converter.supplier.mzml.converter.io;
import java.io.File;
-import java.io.FileNotFoundException;
import java.io.FileWriter;
import java.io.IOException;
@@ -25,17 +24,20 @@
public class MassSpectrumWriter implements IMassSpectraWriter {
@Override
- public void write(File file, IScanMSD massSpectrum, boolean append, IProgressMonitor monitor) throws FileNotFoundException, FileIsNotWriteableException, IOException {
+ public void write(File file, IScanMSD massSpectrum, boolean append, IProgressMonitor monitor) throws FileIsNotWriteableException, IOException {
+ throw new UnsupportedOperationException();
}
@Override
- public void write(File file, IMassSpectra massSpectra, boolean append, IProgressMonitor monitor) throws FileNotFoundException, FileIsNotWriteableException, IOException {
+ public void write(File file, IMassSpectra massSpectra, boolean append, IProgressMonitor monitor) throws FileIsNotWriteableException, IOException {
+ throw new UnsupportedOperationException();
}
@Override
public void writeMassSpectrum(FileWriter fileWriter, IScanMSD massSpectrum, IProgressMonitor monitor) throws IOException {
+ throw new UnsupportedOperationException();
}
}
diff --git a/chemclipse/tests/org.eclipse.chemclipse.msd.converter.supplier.mzml.fragment.test/META-INF/MANIFEST.MF b/chemclipse/tests/org.eclipse.chemclipse.msd.converter.supplier.mzml.fragment.test/META-INF/MANIFEST.MF
index c27e330c63..50680c1025 100644
--- a/chemclipse/tests/org.eclipse.chemclipse.msd.converter.supplier.mzml.fragment.test/META-INF/MANIFEST.MF
+++ b/chemclipse/tests/org.eclipse.chemclipse.msd.converter.supplier.mzml.fragment.test/META-INF/MANIFEST.MF
@@ -7,4 +7,5 @@ Bundle-Version: 0.9.0.qualifier
Bundle-Vendor: ChemClipse
Fragment-Host: org.eclipse.chemclipse.msd.converter.supplier.mzml;bundle-version="0.8.0"
Bundle-RequiredExecutionEnvironment: JavaSE-1.8
-Require-Bundle: org.junit;bundle-version="4.11.0"
+Require-Bundle: org.junit;bundle-version="4.11.0",
+ org.eclipse.chemclipse.rcp.app.test;bundle-version="0.9.0"