tabix-0.2.6-GCCcore-11.2.0.eb

# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
# Author: Pablo Escobar Lopez
# Swiss Institute of Bioinformatics
# Biozentrum - University of Basel
# Author: Jens Timmerman, Ghent University
# Contribution from the NIHR Biomedical Research Centre
# Guy's and St Thomas' NHS Foundation Trust and King's College London
# uploaded by J. Sassmannshausen
# updated to newer toolchain

easyblock = 'MakeCp'

name = 'tabix'
version = '0.2.6'

homepage = 'http://samtools.sourceforge.net'
description = """ Generic indexer for TAB-delimited genome position files """

toolchain = {'name': 'GCCcore', 'version': '11.2.0'}

source_urls = [('https://sourceforge.net/projects/samtools/files/', 'download')]
sources = [SOURCE_TAR_BZ2]
checksums = ['e4066be7101bae83bec62bc2bc6917013f6c2875b66eb5055fbb013488d68b73']

builddependencies = [('binutils', '2.37')]

dependencies = [('zlib', '1.2.11')]

buildopts = 'CC="$CC" CFLAGS="$CFLAGS -L$EBROOTZLIB/lib"'

files_to_copy = [
    (["tabix", "bgzip", "tabix.py"], "bin"),
    (["tabix.1"], "man/man1"),
    (["libtabix.a"], "lib64"),
    (["*.h"], "include"),
    "example.gtf.gz",
    "example.gtf.gz.tbi",
    "NEWS",
    "ChangeLog"
]

sanity_check_paths = {
    'files': ["bin/tabix", "bin/bgzip", "bin/tabix.py", "lib/libtabix.a"],
    'dirs': ["include"],
}

moduleclass = 'bio'