OrthoFinder-2.5.2-foss-2020b.eb

easyblock = 'PythonPackage'

name = 'OrthoFinder'
version = '2.5.2'

homepage = 'https://github.com/davidemms/OrthoFinder'
description = "OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics"

toolchain = {'name': 'foss', 'version': '2020b'}

github_account = 'davidemms'
source_urls = [GITHUB_SOURCE]
sources = ['%(version)s.tar.gz']
checksums = ['e85c1fb920179655bf1611b6c0cb17efdf1fd26caf07667ae7eefe05be3fbc35']

dependencies = [
    ('Python', '3.8.6'),
    ('SciPy-bundle', '2020.11'),
    ('BLAST+', '2.11.0'),
    ('DIAMOND', '2.0.7'),
    ('FastME', '2.1.6.1'),
    ('MCL', '14.137'),
    ('MMseqs2', '13-45111'),
]

download_dep_fail = True
use_pip = True

# see https://github.com/davidemms/OrthoFinder/pull/500
preinstallopts = 'sed -i "s/ExampleDataset/ExampleData/g" setup.py && '

options = {'modulename': 'scripts_of'}

sanity_check_paths = {
    'files': ['bin/%s' % x for x in ['convert_orthofinder_tree_ids', 'make_ultrametric', 'orthofinder',
                                     'primary_transcript']],
    'dirs': ['ExampleData', 'lib/python%(pyshortver)s/site-packages'],
}

sanity_check_commands = ["orthofinder --help"]

sanity_pip_check = True

moduleclass = 'bio'