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bugfix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE #1708

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merged 2 commits into from
Jul 26, 2022
Merged

bugfix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE #1708

merged 2 commits into from
Jul 26, 2022

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@georgemccabe georgemccabe commented Jul 25, 2022 •
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Corresponding PR for develop is #1709

Pull Request Testing

  • Describe testing already performed for these changes:

Ran PhaseDiagram use case that previously failed locally if INPUT_BASE is not writable by the user and confirmed that it now works.

  • Recommend testing for the reviewer(s) to perform, including the location of input datasets, and any additional instructions:

Confirm that changes look OK and that all automated tests pass except the diff for the new output file that is now written by the use case in OUTPUT_BASE

  • Do these changes include sufficient documentation updates, ensuring that no errors or warnings exist in the build of the documentation? [Yes]

  • Do these changes include sufficient testing updates? [Yes]

  • Will this PR result in changes to the test suite? [Yes]

    If yes, describe the new output and/or changes to the existing output:

    The time_list_lead000.txt may flag a difference since it is now written into OUTPUT_BASE

  • Please complete this pull request review by 7/26/2022.

Pull Request Checklist

See the METplus Workflow for details.

  • Add any new Python packages to the METplus Components Python Requirements table.
  • Review the source issue metadata (required labels, projects, and milestone).
  • Complete the PR definition above.
  • Ensure the PR title matches the feature or bugfix branch name.
  • Define the PR metadata, as permissions allow.
    Select: Reviewer(s)
    Select: Organization level software support Project or Repository level development cycle Project
    Select: Milestone as the version that will include these changes
  • After submitting the PR, select Linked issues with the original issue number.
  • After the PR is approved, merge your changes. If permissions do not allow this, request that the reviewer do the merge.
  • Close the linked issue and delete your feature or bugfix branch from GitHub.

@georgemccabe
per #1706, create output directory if it does not already exist becau…
b3a1fd7 
…se the file i/o logic will fail if the directory does not exist
@georgemccabe
per #1706, changed directory to write file to be relative to OUTPUT_B…
12c01ee 
…ASE instead of INPUT_BASE and changed input directory path to find the correct file in the INPUT_BASE
@georgemccabe georgemccabe added this to the METplus-5.0.0 milestone Jul 25, 2022
@georgemccabe georgemccabe requested a review from CPKalb July 25, 2022 20:47
@georgemccabe georgemccabe linked an issue Jul 25, 2022 that may be closed by this pull request
Bugfix: Phase Diagram use case writes all output into OUTPUT_BASE instead of INPUT_BASE #1706
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@georgemccabe georgemccabe mentioned this pull request Jul 25, 2022
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CPKalb
CPKalb reviewed Jul 26, 2022
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Tested and works as expected

@georgemccabe georgemccabe merged commit 23bda51 into develop Jul 26, 2022
@georgemccabe georgemccabe deleted the bugfix_develop_1706_write_to_input_base branch July 27, 2022 20:05
georgemccabe pushed a commit that referenced this pull request Apr 6, 2023
@github-actions
Update develop-ref after #2094 (#2108)
aca29d1 
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: johnhg <[email protected]>
Co-authored-by: cristianastan2 <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: Lisa Goodrich <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: Hank Fisher <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Will Mayfield <[email protected]>
Co-authored-by: metplus-bot <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
fixing some spacing #770
Fixing formatting, typos etc.  #770
Fixing formatting  #770
fixing typos, spacing, etc. #770
fixing typos, grammar and punctuation. #770
Fixing TOC and coding block #770
fixing note #770
fix.  Updating bolding and italics for file names and directories #770
fixing space #770
fixing conflict #2 #770
fixing typos #770
fixing typos #2 #770
fixing formatting #770
fixing errors #650
fixing errors take 2 #650
fixing errors take 3 #650
fixing errors take 4 #650
fixing errors take 5 #650
fixing question order #650
fix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE (#1708)
fix #1713 develop METPLOTPY_BASE (#1715)
fix #1691 remove whitespace from output file paths (#1721)
fix Contributor's Guide GitHub Workflow page (#1774)
fix release (#1790)
fix GitHub Actions warnings (#1864)
fix #1884 develop PCPCombine {custom} in subtract method (#1887)
fix #1939 develop - failure reading obs when zipped file also exists (#1941)
Closes #1986
fix develop Fix broken documentation links (#2004)
fix #2026 develop StatAnalysis looping (#2028)
fix priority of obs_window config variables so that wrapper-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062)
fix #2070 var list numeric order (#2072)
fix #2087 develop docs_pdf (#2091)
fix #2096/#2098 develop - fix skip if output exists and do not error if no commands were run (#2099)
georgemccabe pushed a commit that referenced this pull request Apr 28, 2023
@github-actions
Update develop-ref after dtcenter/MET#2529 and #2148 (#2153)
4e79162 
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: johnhg <[email protected]>
Co-authored-by: cristianastan2 <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: Lisa Goodrich <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: Hank Fisher <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Will Mayfield <[email protected]>
Co-authored-by: metplus-bot <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
fixing errors #650
fixing errors take 2 #650
fixing errors take 3 #650
fixing errors take 4 #650
fixing errors take 5 #650
fixing question order #650
fix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE (#1708)
fix #1713 develop METPLOTPY_BASE (#1715)
fix #1691 remove whitespace from output file paths (#1721)
fix Contributor's Guide GitHub Workflow page (#1774)
fix release (#1790)
fix GitHub Actions warnings (#1864)
fix #1884 develop PCPCombine {custom} in subtract method (#1887)
fix #1939 develop - failure reading obs when zipped file also exists (#1941)
Closes #1986
fix develop Fix broken documentation links (#2004)
fix #2026 develop StatAnalysis looping (#2028)
fix priority of obs_window config variables so that wrapper-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062)
fix #2070 var list numeric order (#2072)
fix #2087 develop docs_pdf (#2091)
fix #2096/#2098 develop - fix skip if output exists and do not error if no commands were run (#2099)
Fix for Dockerfile smell DL4000 (#2112)
fix #2082 develop regrid.convert/censor_thresh/censor_val (#2140)
fix #2082 main_v5.0 regrid.convert/censor_thresh/censor_val (#2101)
fix #2137 develop PointStat -obs_valid_beg/end (#2141)
JohnHalleyGotway pushed a commit that referenced this pull request May 11, 2023
@github-actions
Update develop-ref after dtcenter/MET#2524 (#2171)
3efb304 
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: johnhg <[email protected]>
Co-authored-by: cristianastan2 <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: Lisa Goodrich <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: Hank Fisher <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Will Mayfield <[email protected]>
Co-authored-by: metplus-bot <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
fixing errors #650
fixing errors take 2 #650
fixing errors take 3 #650
fixing errors take 4 #650
fixing errors take 5 #650
fixing question order #650
fix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE (#1708)
fix #1713 develop METPLOTPY_BASE (#1715)
fix #1691 remove whitespace from output file paths (#1721)
fix Contributor's Guide GitHub Workflow page (#1774)
fix release (#1790)
fix GitHub Actions warnings (#1864)
fix #1884 develop PCPCombine {custom} in subtract method (#1887)
fix #1939 develop - failure reading obs when zipped file also exists (#1941)
Closes #1986
fix develop Fix broken documentation links (#2004)
fix #2026 develop StatAnalysis looping (#2028)
fix priority of obs_window config variables so that wrapper-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062)
fix #2070 var list numeric order (#2072)
fix #2087 develop docs_pdf (#2091)
fix #2096/#2098 develop - fix skip if output exists and do not error if no commands were run (#2099)
Fix for Dockerfile smell DL4000 (#2112)
fix #2082 develop regrid.convert/censor_thresh/censor_val (#2140)
fix #2082 main_v5.0 regrid.convert/censor_thresh/censor_val (#2101)
fix #2137 develop PointStat -obs_valid_beg/end (#2141)
fix failured introduced by urllib3 (see urllib3/urllib3#2168)
fix #2161 develop PCPCombine additional field arguments in -subtract mode (#2162)
georgemccabe pushed a commit that referenced this pull request Jun 5, 2023
@github-actions
Update develop-ref after #2192 (#2199)
d77358d 
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: johnhg <[email protected]>
Co-authored-by: cristianastan2 <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: Lisa Goodrich <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: Hank Fisher <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Mrinal Biswas <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: bikegeek <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Will Mayfield <[email protected]>
Co-authored-by: metplus-bot <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Giovanni Rosa <[email protected]>
Co-authored-by: mrinalbiswas <[email protected]>
fixing errors #650
fixing errors take 2 #650
fixing errors take 3 #650
fixing errors take 4 #650
fixing errors take 5 #650
fixing question order #650
fix #1706 fix PhaseDiagram use case to avoid writing into INPUT_BASE (#1708)
fix #1713 develop METPLOTPY_BASE (#1715)
fix #1691 remove whitespace from output file paths (#1721)
fix Contributor's Guide GitHub Workflow page (#1774)
fix release (#1790)
fix GitHub Actions warnings (#1864)
fix #1884 develop PCPCombine {custom} in subtract method (#1887)
fix #1939 develop - failure reading obs when zipped file also exists (#1941)
Closes #1986
fix develop Fix broken documentation links (#2004)
fix #2026 develop StatAnalysis looping (#2028)
fix priority of obs_window config variables so that wrapper-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062)
fix #2070 var list numeric order (#2072)
fix #2087 develop docs_pdf (#2091)
fix #2096/#2098 develop - fix skip if output exists and do not error if no commands were run (#2099)
Fix for Dockerfile smell DL4000 (#2112)
fix #2082 develop regrid.convert/censor_thresh/censor_val (#2140)
fix #2082 main_v5.0 regrid.convert/censor_thresh/censor_val (#2101)
fix #2137 develop PointStat -obs_valid_beg/end (#2141)
fix failured introduced by urllib3 (see urllib3/urllib3#2168)
fix #2161 develop PCPCombine additional field arguments in -subtract mode (#2162)
fix #2168 develop - StatAnalysis time shift (#2169)
fix releases. (#2183)
fix #2189 develop - spaces in complex thresholds (#2191)
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METplus-Wrappers-5.0.0-beta2 (8/3/22)
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Bugfix: Phase Diagram use case writes all output into OUTPUT_BASE instead of INPUT_BASE
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@georgemccabe @CPKalb