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pb2nc.cc
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// *=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*
// ** Copyright UCAR (c) 1992 - 2022
// ** University Corporation for Atmospheric Research (UCAR)
// ** National Center for Atmospheric Research (NCAR)
// ** Research Applications Lab (RAL)
// ** P.O.Box 3000, Boulder, Colorado, 80307-3000, USA
// *=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*
////////////////////////////////////////////////////////////////////////
//
// Filename: pb2nc.cc
//
// Description:
// Based on user specified options, this tool filters point
// observations from a PrepBufr input file, derives requested
// observation types, and writes the output to a NetCDF file.
// PrepBufr observations must be reformatted in this way prior to
// using them in the Point-Stat tool.
//
// Mod# Date Name Description
// ---- ---- ---- -----------
// 000 03-27-07 Halley Gotway New
// 001 12-19-07 Halley Gotway Add support for ANYAIR, ANYSFC,
// and ONLYSF message types.
// 002 12-20-07 Halley Gotway Derive PRMSL.
// 003 01-31-08 Halley Gotway Remove unused array elements from
// the hdr_arr and obs_arr and allow it to run on
// multiple PrepBufr files at once.
// 004 08-22-08 Halley Gotway Change the arguments to dumppb
// function for it to work with Fortran90/95
// compilers.
// 005 02-12-09 Halley Gotway Fix npbmsg bug when reading
// multiple PrepBufr files and use of valid_beg and
// valid_end options.
// 006 06-01-10 Halley Gotway Pass flags to dumppb to only dump
// observation for requested message types.
// 007 02-15-11 Halley Gotway Fix event_stack bug for which the
// logic was reversed.
// 008 02-28-11 Halley Gotway Modify relative humidity derivation
// to match the Unified-PostProcessor.
// 009 06-01-11 Halley Gotway Call closepb for input file
// descriptor.
// 010 10/28/11 Holmes Added use of command line class to
// parse the command line arguments.
// 011 11/14/11 Holmes Added code to enable reading of
// multiple config files.
// 012 05/11/12 Halley Gotway Switch to using vx_config library.
// 013 07/12/13 Halley Gotway Use observations of sensible
// temperature instead of virtual temperature.
// 014 07/23/13 Halley Gotway Update sensible temperature fix
// to handle older GDAS PREPBUFR files.
// 06/07/17 Howard Soh Added more options: -vars, -all, and -index.
// 09/15/17 Howard Soh Removed options: -all, and -use_var_id.
// 015 02/10/18 Halley Gotway Add message_type_group_map.
// 016 07/23/18 Halley Gotway Support masks defined by gen_vx_mask.
// 017 07/06/22 Howard Soh METplus-Internal #19 Rename main to met_main
// 018 09/12/22 Prestopnik MET #2227 Remove namespace std and netCDF
// from header files
//
////////////////////////////////////////////////////////////////////////
using namespace std;
#include <cstdio>
#include <cstdlib>
#include <ctype.h>
#include <dirent.h>
#include <fstream>
#include <limits>
#include <math.h>
#include <sys/stat.h>
#include <sys/types.h>
#include <unistd.h>
#include <assert.h>
#include <netcdf>
using namespace netCDF;
#include "main.h"
#include "pb2nc_conf_info.h"
#include "data_class.h"
#include "data2d_factory.h"
#include "vx_log.h"
#include "vx_nc_util.h"
#include "vx_grid.h"
#include "vx_util.h"
#include "vx_pb_util.h"
#include "vx_analysis_util.h"
#include "vx_cal.h"
#include "vx_math.h"
#include "write_netcdf.h"
#include "vx_summary.h"
#include "nc_obs_util.h"
#include "nc_point_obs_out.h"
#include "nc_summary.h"
////////////////////////////////////////////////////////////////////////
struct derive_var_cfg {
int var_index;
ConcatString var_name;
derive_var_cfg(ConcatString _var_name);
};
////////////////////////////////////////////////////////////////////////
//
// Constants
//
static const char * default_config_filename = "MET_BASE/config/PB2NCConfig_default";
static const char *program_name = "pb2nc";
static const char *not_assigned = "not_assigned";
static const float fill_value = -9999.f;
static const int missing_cycle_minute = -1;
// Constants used to interface to Fortran subroutines
// Missing value for BUFR data
static const double r8bfms = 1.0E10;
// Maximum number of BUFR parameters
static const int mxr8pm = 10;
// Maximum number of BUFR levels
static const int mxr8lv_small = 255;
static const int mxr8lv = 1023; // was 255;
// Maximum number of BUFR event sequences
static const int mxr8vn = 10;
// Maximum number of BUFR variable types
static const int mxr8vt = 6;
// Maximum length of BUFR variable name
static const int mxr8nm = 8;
// Maximum number of BUFR variable types
static const int COUNT_THRESHOLD = 16;
// File unit number for opening the PrepBufr file
static const int file_unit = 11;
// 2nd file unit number for opening the PrepBufr file
static const int dump_unit = 22;
static int msg_typ_ret[n_vld_msg_typ];
// Grib codes corresponding to the variable types
static const int var_gc[mxr8vt] = {
pres_grib_code, spfh_grib_code, tmp_grib_code,
hgt_grib_code, ugrd_grib_code, vgrd_grib_code
};
static int bufr_var_code[mxr8vt];
// Number of variable types which may be derived
static const int n_derive_gc = 6;
// Listing of grib codes for variable types which may be derived
static const int derive_gc[n_derive_gc] = {
dpt_grib_code, wdir_grib_code,
wind_grib_code, rh_grib_code,
mixr_grib_code, prmsl_grib_code
};
// The fortran code is hard-coded with 200 levels
#define MAX_CAPE_VALUE 10000
#define MAX_CAPE_LEVEL 200
#define CAPE_INPUT_VARS 3
static float cape_data_pres[MAX_CAPE_LEVEL];
static float cape_data_temp[MAX_CAPE_LEVEL];
static float cape_data_spfh[MAX_CAPE_LEVEL];
static float static_dummy_200[MAX_CAPE_LEVEL];
static float static_dummy_201[MAX_CAPE_LEVEL+1];
#define ROG 287.04
#define MAX_PBL 10000
#define MAX_PBL_LEVEL 256
#define PBL_DEBUG_LEVEL 8
static bool IGNORE_Q_PBL = true;
static bool IGNORE_Z_PBL = true;
static bool USE_LOG_INTERPOLATION = true;
static float pbl_data_pres[MAX_PBL_LEVEL]; // mb
static float pbl_data_temp[MAX_PBL_LEVEL]; // Kelvin
static float pbl_data_spfh[MAX_PBL_LEVEL]; // ? / 1,000,000
static float pbl_data_hgt[MAX_PBL_LEVEL];
static float pbl_data_ugrd[MAX_PBL_LEVEL];
static float pbl_data_vgrd[MAX_PBL_LEVEL];
// PREPBUFR VIRTMP program code
static const double virtmp_prog_code = 8.0;
static const int MIN_FORTRAN_FILE_ID = 1;
static const int MAX_FORTRAN_FILE_ID = 99;
////////////////////////////////////////////////////////////////////////
//
// Variables for command line arguments
//
// StringArray to store PrepBufr file name
static StringArray pbfile;
// Output NetCDF file name
static ConcatString ncfile;
// Input configuration file
static ConcatString config_file;
static PB2NCConfInfo conf_info;
static MetNcPointObsOut nc_point_obs;
// Beginning and ending retention times
static unixtime valid_beg_ut, valid_end_ut;
// Number of PrepBufr messages to process from the command line
static int nmsg = -1;
static int nmsg_percent = -1;
// Dump contents of PrepBufr file to ASCII files
static bool dump_flag = false;
static ConcatString dump_dir = (string)".";
static bool do_all_vars = false;
static bool override_vars = false;
static bool collect_metadata = false;
static StringArray bufr_target_variables;
static ConcatString data_plane_filename;
static int compress_level = -1;
static bool save_summary_only = false;
////////////////////////////////////////////////////////////////////////
// Shared memory defined in the PREPBC common block in readpb.prm
static double hdr[mxr8pm];
static double evns[mxr8vt][mxr8vn][mxr8lv][mxr8pm];
static int nlev;
static const int BUFR_NUMBER_START = 13;
static const int BUFR_NAME_START = 2;
static const int BUFR_NAME_LEN = 8;
static const int BUFR_DESCRIPTION_START = 22;
static const int BUFR_DESCRIPTION_LEN = 56;
static const int BUFR_UNIT_START = 40;
static const int BUFR_UNIT_LEN = 25;
static const int BUFR_SEQUENCE_START = 13;
static const int BUFR_SEQUENCE_LEN = 66;
static const char *prepbufr_p_event = "POB PQM PPC PRC PFC PAN CAT";
static const char *prepbufr_q_event = "QOB QQM QPC QRC QFC QAN CAT";
static const char *prepbufr_t_event = "TOB TQM TPC TRC TFC TAN CAT";
static const char *prepbufr_z_event = "ZOB ZQM ZPC ZRC ZFC ZAN CAT";
static const char *prepbufr_u_event = "UOB WQM WPC WRC UFC UAN CAT";
static const char *prepbufr_v_event = "VOB WQM WPC WRC VFC VAN CAT";
static const char *prepbufr_hdrs_str = "SID XOB YOB DHR ELV TYP T29 ITP";
static const char *default_sid_name = "SID";
static const char *default_lat_name = "YOB";
static const char *default_lon_name = "XOB";
static const char *default_ymd_name = "YEAR MNTH DAYS";
static const char *default_hms_name = "HOUR MINU SECO";
static const char *airnow_aux_vars = "TPHR QCIND";
// Pick the latter one if exists multiuple variables
static const char *bufr_avail_sid_names = "SID SAID RPID";
static const char *bufr_avail_latlon_names = "XOB CLON CLONH YOB CLAT CLATH";
static const char *derived_mlcape = "D_MLCAPE";
static const char *derived_cape = "D_CAPE";
static const char *derived_pbl = "D_PBL";
static const float MLCAPE_INTERVAL = 3000.;
static double bufr_obs[mxr8lv][mxr8pm];
static double bufr_obs_extra[mxr8lv][mxr8pm];
static double bufr_pres_lv[mxr8lv]; // Retain the pressure in hPa
static double bufr_msl_lv[mxr8lv]; // Convert from geopotential height to MSL
static StringArray prepbufr_hdrs;
static StringArray prepbufr_vars;
static StringArray prepbufr_event_members;
static StringArray prepbufr_derive_vars;
static StringArray event_names;
static StringArray event_members;
static StringArray ascii_vars;
static StringArray var_names;
static StringArray var_units;
static StringArray tableB_vars;
static StringArray tableB_descs;
static ConcatString bufr_hdrs; // header name list to read header
static StringArray bufr_hdr_name_arr; // available header name list
static StringArray bufr_obs_name_arr; // available obs. name list
static IntArray filtered_times;
static vector<derive_var_cfg> bufr_derive_cfgs;
static map<ConcatString, StringArray> variableTypeMap;
static bool do_summary;
static SummaryObs *summary_obs;
////////////////////////////////////////////////////////////////////////
static int n_total_obs; // Running total of observations
static vector< Observation > observations;
//
// Output NetCDF file, dimensions, and variables
//
static NcFile *f_out = (NcFile *) 0;
////////////////////////////////////////////////////////////////////////
extern "C" {
void numpbmsg_(int *, int *);
void numpbmsg_new_(const char *, int *, int *);
void openpb_(const char *, int *);
void closepb_(int *);
void readpb_(int *, int *, int *, double[mxr8pm],
double[mxr8vt][mxr8vn][mxr8lv][mxr8pm], int *);
void readpb_hdr_ (int *,int *,double[mxr8pm]);
void ireadns_ (int *, char *, int *);
void readpbevt_(int *, int *, int *, double[mxr8vn][mxr8lv][mxr8pm],
char[mxr8lv*mxr8pm], int *, int *);
void readpbint_(int *, int *, int *, double[mxr8lv][mxr8pm],
char[mxr8lv*mxr8pm], int *, int *);
void dumppb_(const char *, int *, const char *, int *,
const char *, int *, int *);
void dump_tbl_(const char *, int *, const char *, int *);
int get_tmin_(int *, int *);
void calcape_(const int *, const int *, float [MAX_CAPE_LEVEL], float [MAX_CAPE_LEVEL],
float [MAX_CAPE_LEVEL],float *, float *, float *, float [MAX_CAPE_LEVEL+1],
const int *, const int *, const int *, const int *,
float *, float *, float *, float *, float [MAX_CAPE_LEVEL]);
void calpbl_(float[MAX_PBL_LEVEL], float[MAX_PBL_LEVEL], float[MAX_PBL_LEVEL],
float[MAX_PBL_LEVEL], float[MAX_PBL_LEVEL], float[MAX_PBL_LEVEL],
const int *, float *, int *);
}
// Defined at write_netcdf.cc
extern int obs_data_idx;
////////////////////////////////////////////////////////////////////////
static void initialize();
static void process_command_line(int, char **);
static void open_netcdf();
static void process_pbfile(int);
static void process_pbfile_metadata(int);
static void write_netcdf_hdr_data();
static void clean_up();
static void addObservation(const float *obs_arr, const ConcatString &hdr_typ,
const ConcatString &hdr_sid, const time_t hdr_vld,
const float hdr_lat, const float hdr_lon, const float hdr_elv,
const float quality_mark, const int buf_size);
static int get_event_index(int, int, int);
static int get_event_index_temp(int, int, int);
static void dbl2str(double *, ConcatString&);
static bool keep_message_type(const char *);
static bool keep_station_id(const char *);
static bool keep_valid_time(const unixtime, const unixtime,
const unixtime);
static bool keep_pb_report_type(int);
static bool keep_in_report_type(int);
static bool keep_instrument_type(int);
static bool keep_bufr_obs_index(int);
static bool keep_level_category(int);
static float derive_grib_code(int, float *, float *, double, float&);
static int combine_tqz_and_uv(map<float, float*>,
map<float, float*>, map<float, float*> &);
static float compute_pbl(map<float, float*> pqtzuv_map_tq,
map<float, float*> pqtzuv_map_uv);
static void copy_pqtzuv(float *to_pqtzuv, float *from_pqtzuv, bool copy_all=true);
static bool insert_pbl(float *obs_arr, const float pbl_value, const int pbl_code,
const float pbl_p, const float pbl_h, const float pbl_qm,
const float hdr_lat, const float hdr_lon,
const float hdr_elv, const time_t hdr_vld_ut,
const ConcatString &hdr_typ, const ConcatString &hdr_sid);
static int interpolate_by_pressure(int length, float *pres_data, float *var_data);
static void interpolate_pqtzuv(float*, float*, float*);
static bool is_valid_pb_data(float pb_value);
static void log_merged_tqz_uv(map<float, float*> pqtzuv_map_tq,
map<float, float*> pqtzuv_map_uv,
map<float, float*> &pqtzuv_map_merged,
const char *method_name);
static void log_pbl_input(int pbl_level, const char *method_name);
static void log_tqz_and_uv(map<float, float*> pqtzuv_map_tq,
map<float, float*> pqtzuv_map_uv,
const char *method_name);
static void merge_records(float *first_pqtzuv, map<float, float*> pqtzuv_map_pivot,
map<float, float*> pqtzuv_map_aux,
map<float, float*> &pqtzuv_map_merged);
static void usage();
static void set_pbfile(const StringArray &);
static void set_valid_beg_time(const StringArray &);
static void set_valid_end_time(const StringArray &);
static void set_nmsg(const StringArray &);
static void set_dump_path(const StringArray &);
static void set_collect_metadata(const StringArray &);
static void set_target_variables(const StringArray & a);
static void set_compress(const StringArray &);
static void display_bufr_variables(const StringArray &, const StringArray &,
const StringArray &, const StringArray &);
static void cleanup_hdr_typ(char *hdr_typ, bool is_prepbufr=false);
////////////////////////////////////////////////////////////////////////
derive_var_cfg::derive_var_cfg(ConcatString _var_name) {
var_index = bad_data_int;
var_name = _var_name;
}
////////////////////////////////////////////////////////////////////////
int met_main(int argc, char *argv[]) {
int i;
// Initialize static variables
initialize();
// Process the command line arguments
process_command_line(argc, argv);
if (collect_metadata) {
// Process each PrepBufr file
for(i=0; i<pbfile.n_elements(); i++) {
process_pbfile_metadata(i);
}
display_bufr_variables(tableB_vars, tableB_descs,
bufr_hdr_name_arr, bufr_obs_name_arr);
}
else {
// Open the NetCDF file
open_netcdf();
// Process each PrepBufr file
for(i=0; i<pbfile.n_elements(); i++) {
process_pbfile_metadata(i);
process_pbfile(i);
}
if (do_summary) {
TimeSummaryInfo summaryInfo = conf_info.getSummaryInfo();
summary_obs->summarizeObs(summaryInfo);
summary_obs->setSummaryInfo(summaryInfo);
}
// Write the NetCDF file
write_netcdf_hdr_data();
}
// Deallocate memory and clean up
clean_up();
return(0);
}
////////////////////////////////////////////////////////////////////////
const string get_tool_name() {
return program_name;
}
////////////////////////////////////////////////////////////////////////
void initialize() {
n_total_obs = 0;
nc_point_obs.init_buffer();
prepbufr_vars.clear();
prepbufr_hdrs.clear();
prepbufr_event_members.clear();
prepbufr_hdrs.parse_wsss(prepbufr_hdrs_str);
StringArray tmp_hdr_array;
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_p_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_q_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_t_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_z_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_u_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
tmp_hdr_array.clear();
tmp_hdr_array.parse_wsss(prepbufr_v_event);
prepbufr_event_members.add(tmp_hdr_array);
if (0 < tmp_hdr_array.n_elements()) prepbufr_vars.add(tmp_hdr_array[0]);
prepbufr_derive_vars.add("D_DPT");
prepbufr_derive_vars.add("D_WDIR");
prepbufr_derive_vars.add("D_WIND");
prepbufr_derive_vars.add("D_RH");
prepbufr_derive_vars.add("D_MIXR");
prepbufr_derive_vars.add("D_PRMSL");
prepbufr_derive_vars.add("D_CAPE");
prepbufr_derive_vars.add("D_MLCAPE");
prepbufr_derive_vars.add("D_PBL");
for (int idx=0; idx<(sizeof(hdr) / sizeof(hdr[0])); idx++) {
hdr[idx] = r8bfms * 10;
}
summary_obs = new SummaryObs();
return;
}
////////////////////////////////////////////////////////////////////////
void process_command_line(int argc, char **argv) {
CommandLine cline;
ConcatString default_config_file;
// Check for zero arguments
if(argc == 1) usage();
// Initialize retention times
valid_beg_ut = valid_end_ut = (unixtime) 0;
// Parse the command line into tokens
cline.set(argc, argv);
// Set the usage function
cline.set_usage(usage);
// Add the options function calls
cline.add(set_pbfile, "-pbfile", 1);
cline.add(set_valid_beg_time, "-valid_beg", 1);
cline.add(set_valid_end_time, "-valid_end", 1);
cline.add(set_nmsg, "-nmsg", 1);
cline.add(set_dump_path, "-dump", 1);
cline.add(set_collect_metadata, "-index", 0);
cline.add(set_target_variables, "-vars", 1);
cline.add(set_compress, "-compress", 1);
// Parse the command line
cline.parse();
// Check for error. There should be three arguments left:
// PrepBufr, output NetCDF, and config filenames
if(cline.n() != 3 && !collect_metadata) usage();
// Store the input file names
pbfile.add(cline[0]);
if(cline.n() > 1) ncfile = cline[1];
if(cline.n() > 2) config_file = cline[2];
// Create the default config file name
default_config_file = replace_path(default_config_filename);
if(cline.n() < 2) config_file = default_config_file;
else if(cline.n() < 3) config_file = cline[1];
// List the config files
mlog << Debug(1)
<< "Default Config File: " << default_config_file << "\n"
<< "User Config File: " << config_file << "\n";
// Read the config files
conf_info.read_config(default_config_file.c_str(), config_file.c_str());
// Process the configuration
conf_info.process_config();
// Check that valid_end_ut >= valid_beg_ut
if(valid_beg_ut != (unixtime) 0 &&
valid_end_ut != (unixtime) 0 &&
valid_beg_ut > valid_end_ut) {
mlog << Error << "\nprocess_command_line() -> "
<< "the ending time (" << unix_to_yyyymmdd_hhmmss(valid_end_ut)
<< ") must be greater than the beginning time ("
<< unix_to_yyyymmdd_hhmmss(valid_beg_ut) << ").\n\n";
exit(1);
}
if (!override_vars) {
bufr_target_variables = conf_info.obs_bufr_var;
do_all_vars = (0 == conf_info.obs_bufr_var.n_elements());
}
do_summary = conf_info.getSummaryInfo().flag;
if (!do_summary) save_summary_only = false;
else save_summary_only = !conf_info.getSummaryInfo().raw_data;
return;
}
////////////////////////////////////////////////////////////////////////
ConcatString save_bufr_table_to_file(const char *blk_file, int file_id) {
int len;
ConcatString tbl_filename, tbl_prefix;
tbl_prefix << conf_info.tmp_dir << "/" << "tmp_pb2nc_bufr";
tbl_filename = make_temp_file_name(tbl_prefix.c_str(), "tbl");
len = tbl_filename.length();
if (file_id > MAX_FORTRAN_FILE_ID || file_id < MIN_FORTRAN_FILE_ID) {
mlog << Error << "\nsave_bufr_table_to_file() -> "
<< "Invalid file ID [" << file_id << "] between 1 and 99.\n\n";
}
openpb_(blk_file, &file_id);
dump_tbl_(blk_file, &file_id, tbl_filename.c_str(), &len);
closepb_(&file_id);
//close(file_id);
// Delete the temporary blocked file
remove_temp_file((string)blk_file);
return tbl_filename;
}
bool is_prepbufr_file(StringArray *events) {
bool is_prepbufr = events->has("P__EVENT") && events->has("Q__EVENT")
&& events->has("T__EVENT") && events->has("Z__EVENT");
return is_prepbufr;
}
////////////////////////////////////////////////////////////////////////
void get_variable_info(const char* tbl_filename) {
static const char *method_name = " get_variable_info()";
FILE * fp;
char * line = NULL;
size_t len = 1024;
ssize_t read;
event_names.clear();
event_members.clear();
ascii_vars.clear();
var_names.clear();
var_units.clear();
tableB_vars.clear();
tableB_descs.clear();
fp = fopen(tbl_filename, "r");
ConcatString input_data;
if (fp != NULL) {
char var_name[BUFR_NAME_LEN+1];
char var_desc[max(BUFR_DESCRIPTION_LEN,BUFR_SEQUENCE_LEN)+1];
char var_unit_str[BUFR_UNIT_LEN+1];
bool find_mnemonic = false;
line = (char *)malloc(len * sizeof(char));
if( line == NULL) {
mlog << Error << "\n" << method_name << " -> "
<< "Unable to allocate buffer\n\n";
exit(1);
}
// Processing section 1
int var_count1 = 0;
while ((read = getline(&line, &len, fp)) != -1) {
if (NULL != strstr(line,"--------")) continue;
if (NULL != strstr(line,"MNEMONIC")) {
if (find_mnemonic) break;
find_mnemonic = true;
continue;
}
if ('0' != line[BUFR_NUMBER_START]) continue;
m_strncpy(var_name, (line+BUFR_NAME_START), BUFR_NAME_LEN,
method_name, "var_name", true);
var_name[BUFR_NAME_LEN] = '\0';
for (int idx=(BUFR_NAME_LEN-1); idx >=0; idx--) {
if (' ' != var_name[idx] ) break;
var_name[idx] = '\0';
}
if (0 == m_strlen(var_name)) continue;
var_count1++;
m_strncpy(var_desc, (line+BUFR_DESCRIPTION_START), BUFR_DESCRIPTION_LEN,
method_name, "var_desc", true);
var_desc[BUFR_DESCRIPTION_LEN] = '\0';
for (int idx=(BUFR_DESCRIPTION_LEN-1); idx>=0; idx--) {
if (' ' != var_desc[idx] && '|' != var_desc[idx]) {
break;
}
var_desc[idx] = '\0';
}
mlog << Debug(10) << method_name << " sec. 1 var: ["
<< var_name << "] \tdesc: [" << var_desc << "]\n";
tableB_vars.add(var_name);
tableB_descs.add(var_desc);
}
// Skip section 2
while ((read = getline(&line, &len, fp)) != -1) {
if (NULL != strstr(line,"MNEMONIC")) break;
if (NULL == strstr(line,"EVENT")) continue;
m_strncpy(var_name, (line+BUFR_NAME_START), BUFR_NAME_LEN,
method_name, "var_name2", true);
var_name[BUFR_NAME_LEN] = '\0';
for (int idx=(BUFR_NAME_LEN-1); idx >=0; idx--) {
if (' ' != var_name[idx] ) break;
var_name[idx] = '\0';
}
//if (NULL == strstr(var_name,"EVENT")) continue;
m_strncpy(var_desc, (line+BUFR_SEQUENCE_START), BUFR_SEQUENCE_LEN,
method_name, "var_desc2", true);
var_desc[BUFR_SEQUENCE_LEN] = '\0';
for (int idx=(BUFR_SEQUENCE_LEN-1); idx>=0; idx--) {
if (' ' != var_desc[idx] && '|' != var_desc[idx]) {
break;
}
var_desc[idx] = '\0';
}
mlog << Debug(10) << method_name << " event: ["
<< var_name << "] \tdesc: [" << var_desc << "]\n";
event_names.add(var_name);
event_members.add(var_desc);
}
getline(&line, &len, fp);
// Processing section 3
while ((read = getline(&line, &len, fp)) != -1) {
if (' ' == line[BUFR_NAME_START]) continue;
if ('-' == line[BUFR_NAME_START]) break;
m_strncpy(var_name, (line+BUFR_NAME_START), BUFR_NAME_LEN,
method_name, "var_name3", true);
var_name[BUFR_NAME_LEN] = '\0';
for (int idx=(BUFR_NAME_LEN-1); idx >=0; idx--) {
if (' ' != var_name[idx] ) break;
var_name[idx] = '\0';
}
if (NULL != strstr(line,"CCITT IA5")) {
ascii_vars.add(var_name);
m_strncpy(var_unit_str, "CCITT IA5", sizeof(var_unit_str),
method_name, "var_unit_str1", true);
}
else {
m_strncpy(var_unit_str, (line+BUFR_UNIT_START), BUFR_UNIT_LEN,
method_name, "var_unit_str2", true);
var_unit_str[BUFR_UNIT_LEN] = '\0';
for (int idx=(BUFR_UNIT_LEN-1); idx>=0; idx--) {
if (' ' != var_unit_str[idx] && '|' != var_unit_str[idx]) {
break;
}
var_unit_str[idx] = '\0';
}
var_names.add(var_name);
var_units.add(var_unit_str);
mlog << Debug(10) << method_name << " sec. 3 var: ["
<< var_name << "] \tdesc: [" << var_desc << "]\n";
}
}
fclose(fp);
if (line)
free(line);
}
return;
}
////////////////////////////////////////////////////////////////////////
void open_netcdf() {
// Create the output netCDF file for writing
mlog << Debug(1) << "Creating NetCDF File:\t\t" << ncfile << "\n";
f_out = open_ncfile(ncfile.c_str(), true);
// Check for a valid file
if(IS_INVALID_NC_P(f_out)) {
mlog << Error << "\nopen_netcdf() -> "
<< "trouble opening output file: " << ncfile << "\n\n";
delete f_out;
f_out = (NcFile *) 0;
exit(1);
}
// Define netCDF variables
bool use_var_id = true;
int deflate_level = compress_level;
if (deflate_level < 0) deflate_level = conf_info.conf.nc_compression();
nc_point_obs.set_netcdf(f_out, true);
nc_point_obs.init_obs_vars(use_var_id, deflate_level);
return;
}
////////////////////////////////////////////////////////////////////////
void process_pbfile(int i_pb) {
int npbmsg, npbmsg_total, unit, yr, mon, day, hr, min, sec;
int i, i_msg, i_read, n_file_obs, i_ret, i_date, n_hdr_obs;
int rej_typ, rej_sid, rej_vld, rej_grid, rej_poly;
int rej_elv, rej_pb_rpt, rej_in_rpt, rej_itp, rej_nobs;
int lv, ev, ev_temp, kk, len1, len2;
int n_derived_obs;
double x, y;
int cycle_minute;
unixtime file_ut = (unixtime) 0;
unixtime adjusted_file_ut;
unixtime msg_ut, beg_ut, end_ut;
unixtime min_msg_ut, max_msg_ut;
beg_ut = end_ut = (unixtime) 0;
ConcatString file_name, blk_prefix, blk_file, log_message;
ConcatString prefix;
char time_str[max_str_len];
ConcatString start_time_str, end_time_str;
char min_time_str[max_str_len], max_time_str[max_str_len];
char hdr_typ[max_str_len];
ConcatString hdr_sid;
char modified_hdr_typ[max_str_len];
double hdr_lat = bad_data_double;
double hdr_lon = bad_data_double;
double hdr_elv = bad_data_double;
float pb_report_type, in_report_type, instrument_type;
unixtime hdr_vld_ut = (unixtime) 0;
float quality_mark, dl_category;
float obs_arr[OBS_ARRAY_LEN];
float pqtzuv[mxr8vt], pqtzuv_qty[mxr8vt];
const int debug_level_for_performance = 3;
int start_t, end_t, method_start, method_end;
start_t = end_t = method_start = method_end = clock();
IntArray diff_file_times;
int diff_file_time_count;
StringArray variables_big_nlevels;
static const char *method_name_s = "process_pbfile()";
static const char *method_name = "process_pbfile() -> ";
bool apply_grid_mask = (conf_info.grid_mask.nx() > 0 &&
conf_info.grid_mask.ny() > 0);
bool apply_area_mask = (conf_info.area_mask.nx() > 0 &&
conf_info.area_mask.ny() > 0);
bool apply_poly_mask = (conf_info.poly_mask.n_points() > 0);
// List the PrepBufr file being processed
mlog << Debug(1) << "Processing Bufr File:\t" << pbfile[i_pb]<< "\n";
// Initialize
filtered_times.clear();
min_msg_ut = max_msg_ut = (unixtime) 0;
min_time_str[0] = '\0';
max_time_str[0] = '\0';
// Set the file name for the PrepBufr file
file_name << pbfile[i_pb];
// Build the temporary block file name
blk_prefix << conf_info.tmp_dir << "/" << "tmp_pb2nc_blk";
blk_file = make_temp_file_name(blk_prefix.c_str(), NULL);
mlog << Debug(1) << "Blocking Bufr file to:\t" << blk_file << "\n";
// Assume that the input PrepBufr file is unblocked.
// Block the PrepBufr file and open it for reading.
pblock(file_name.c_str(), blk_file.c_str(), block);
// Dump the contents of the PrepBufr file to ASCII files
if(dump_flag) {
mlog << Debug(1) << "Dumping to ASCII output directory:\t"
<< dump_dir << "\n";
// Check for multiple PrepBufr files
if(pbfile.n_elements() > 1) {
mlog << Error << "\n" << method_name
<< "the \"-dump\" and \"-pbfile\" options may not be "
<< "used together. Only one Bufr file may be dump "
<< "to ASCII at a time.\n\n";
exit(1);
}
for(i=0; i<n_vld_msg_typ; i++) {
msg_typ_ret[i] = keep_message_type(vld_msg_typ_list[i]);
}
unit = dump_unit+i_pb;
if (unit > MAX_FORTRAN_FILE_ID || unit < MIN_FORTRAN_FILE_ID) {
mlog << Error << "\n" << method_name
<< "Invalid file ID [" << unit << "] between 1 and 99.\n\n";
}
prefix = get_short_name(pbfile[i_pb].c_str());
len1 = dump_dir.length();
len2 = prefix.length();
dumppb_(blk_file.c_str(), &unit, dump_dir.c_str(), &len1,
prefix.c_str(), &len2, msg_typ_ret);
}
// Open the blocked temp PrepBufr file for reading
unit = file_unit + i_pb;
if (unit > MAX_FORTRAN_FILE_ID || unit < MIN_FORTRAN_FILE_ID) {
mlog << Error << "\n" << method_name
<< "Invalid file ID [" << unit << "] between 1 and 99.\n\n";
}
openpb_(blk_file.c_str(), &unit);
// Compute the number of PrepBufr records in the current file.
numpbmsg_(&unit, &npbmsg);
npbmsg_total = npbmsg;
// Use the number of records requested by the user if there
// are enough present.
if(nmsg > 0 && nmsg < npbmsg) {
npbmsg = (nmsg_percent > 0 && nmsg_percent <= 100)
? (npbmsg * nmsg_percent / 100) : nmsg;
}
// Check for zero messages to process
if(npbmsg <= 0 || npbmsg_total <= 0) {
mlog << Warning << "\n" << method_name
<< "No Bufr messages to process in file: "
<< pbfile[i_pb] << "\n\n";
// Delete the temporary blocked file
remove_temp_file(blk_file);
return;
}
// Initialize counts
n_derived_obs = 0;
i_ret = n_file_obs = i_msg = 0;
rej_typ = rej_sid = rej_vld = rej_grid = rej_poly = 0;
rej_elv = rej_pb_rpt = rej_in_rpt = rej_itp = rej_nobs = 0;
//processed_count = 0;
int buf_nlev;
bool showed_progress = false;
bool is_prepbufr = is_prepbufr_file(&event_names);
if(mlog.verbosity_level() >= debug_level_for_performance) {
end_t = clock();
mlog << Debug(debug_level_for_performance) << " PERF: " << method_name_s << " "
<< (end_t-start_t)/double(CLOCKS_PER_SEC)
<< " seconds for preparing\n";
start_t = clock();
}
log_message = (is_prepbufr ? " PrepBufr" : " Bufr");
log_message.add(" messages");
if (npbmsg != npbmsg_total) {
log_message << " (out of " << unixtime_to_string(npbmsg_total) << ")";
}
mlog << Debug(2) << "Processing " << npbmsg << log_message << "...\n";
int nlev_max_req = mxr8lv;
if (0 < conf_info.end_level && conf_info.end_level < mxr8lv) {
nlev_max_req = conf_info.end_level;
mlog << Debug(4) << "Request up to " << nlev_max_req << " vertical levels\n";
}
int grib_code, bufr_var_index;
map<ConcatString, ConcatString> message_type_map = conf_info.getMessageTypeMap();
int bin_count = nint(npbmsg/20.0);
int bufr_hdr_length = bufr_hdrs.length();
ConcatString bufr_hdr_names;
bufr_hdr_names = bufr_hdrs.text();
// To compute CAPE
int ivirt = 1; // 0: regular thetap and thetaa
// 1: virtual thetap and thetaa
int itype = 1; // itype 1: where a parcel is lifted from the ground
// itype 2: Where the "best cape" in a number of parcels
int cape_code = -1;
int mlcape_code = -1;
float p1d,t1d,q1d;
int IMM, JMM;
int cape_level, cape_count, cape_cnt_too_big, cape_cnt_surface_msgs;
int cape_cnt_no_levels, cape_cnt_missing_values, cape_cnt_zero_values;
int mlcape_count, mlcape_cnt_too_big;