start-end point issue

[kittyBS]

Hello,
In the results I obtained from the analysis comparing human and mouse data, chromosome start and end values do not match any Ensembl version. For example, while ENSMUSG00000092341 is at the starting and ending points of 5,845,717 -5,852,706 on Ensembl, it is at the starting and ending points of 5795913-5802116 in my outputs. There isn't even an Ortholog in the annotation file. How can I solve this problem? I can already see where the labels are in the queries, but I cannot make the outputs meaningful because the subject outputs have the query tag and wrong start and end points.

[dmitrymyl]

Hello,

Unfortunately, this is not enough information for me to understand your problem. Could you please describe what you exactly did and which coordinates from which output files do you reference?