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analysis_summary.txt
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case_id workflow_step result_name data_path filesize result_uuid run_id run_uuid run_date
C3L-00677 run_tindaisy tindaisy_output_vcf_all /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tindaisy/tindaisy2.cwl/e076065e-7cf0-493b-b0d4-445d489f7dac/call-snp_indel_proximity_filter/execution/output/ProximityFiltered.vcf 18622782 e1ebd48a-6ff9-473c-817b-50888aedaeea C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_tinjasmine tinjasmine_output_vcf_clean /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tinjasmine/TinJasmine.v1.2.vep-100.cwl/9b07da07-f755-4967-893a-b1c1e04ab679/call-canonical_filter/execution/output/HotspotFiltered.vcf 88417466 44b6b874-54c4-4a65-a469-d6ad9839c6d6 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_cnv gene_level_cnv /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_cnv/cnv_workflow.cwl/74445a98-7e9c-4249-bf21-6758d48292c3/call-cnv/execution/glob-ee91797f7d054f32de1c4f0eb6182ea0/C3L-00677.T.geneLevel.from_seg.cn 979956 f294d999-118c-40b3-853d-06070e9e7fa5 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_druggability druggability_aux_trials_output /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_druggability/execution/output/aux_trials_output.txt 0 1727a095-83f8-4937-9a9b-aedef49eaa3f C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_tinjasmine tinjasmine_output_vcf_all /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tinjasmine/TinJasmine.v1.2.vep-100.cwl/9b07da07-f755-4967-893a-b1c1e04ab679/call-vep_annotate_tin_jasmine_v100/execution/results/vep/output_vep.vcf 497145463 379ed4dc-b540-46a4-973c-375b461beea4 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_charger charger_filtered_tsv /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_charger/execution/output/4.filter_charger/C3L-00677.charged2vcf.filtered.tsv 41642 60c2d228-b27f-48a8-8794-f888a9d00fd3 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_msisensor msisensor_output_dis /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_msisensor/msisensor_workflow.cwl/6bdb332a-b068-4e44-ad04-d33dc8651834/call-msisensor/execution/output_dis 786013061 b3648280-a526-409e-ac26-bdcf38fa2e66 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_msisensor msisensor_output_germline /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_msisensor/msisensor_workflow.cwl/6bdb332a-b068-4e44-ad04-d33dc8651834/call-msisensor/execution/output_germline 1013348 566f4329-619e-4b27-9015-10166a5b5eb0 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_tindaisy tindaisy_output_vcf_clean /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tindaisy/tindaisy2.cwl/e076065e-7cf0-493b-b0d4-445d489f7dac/call-canonical_filter/execution/output/HotspotFiltered.vcf 3999265 a2217733-e084-4d6c-b7d1-20b4c5352226 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_tinjasmine tinjasmine_output_maf_clean /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tinjasmine/TinJasmine.v1.2.vep-100.cwl/9b07da07-f755-4967-893a-b1c1e04ab679/call-vcf2maf/execution/result.maf 26177700 27a837ff-d797-438a-9938-e7f0e359a292 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_msisensor msisensor_output_summary /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_msisensor/msisensor_workflow.cwl/6bdb332a-b068-4e44-ad04-d33dc8651834/call-msisensor/execution/output 64 5f23af73-4c7f-4ff1-9ecf-94eff44644ef C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_tindaisy tindaisy_output_maf_clean /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_tindaisy/tindaisy2.cwl/e076065e-7cf0-493b-b0d4-445d489f7dac/call-vcf2maf/execution/result.maf 1106205 4b03f38a-6627-4f29-9119-56c59730651d C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_msisensor msisensor_output_somatic /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_msisensor/msisensor_workflow.cwl/6bdb332a-b068-4e44-ad04-d33dc8651834/call-msisensor/execution/output_somatic 112849 3e77c8cc-8aa1-400b-b36b-39581dcc1401 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_neoscan neoscan_indel_summary /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_neoscan/execution/output/sample/sample.neo.indel.summary 103744 8feadfb4-24a0-441e-a8b8-c24e7bf8f4e6 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_druggability druggability_output /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_druggability/execution/output/output.txt 5335 a0d29ebd-2c01-44c2-8265-50d4e9194079 C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_charger charger_rare_threshold_filtered_tsv /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_charger/execution/output/4.filter_charger/C3L-00677.charged2vcf.filtered.af0.0005.tsv 17747 436d8e32-ec97-43c4-8262-fd8c8a82b1aa C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26
C3L-00677 run_neoscan neoscan_snv_summary /storage1/fs1/dinglab/Active/Projects/estorrs/wombat/tests/data/pecgs_TN_wxs_bam/run/pecgs_TN_wxs_bam/runs/C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9/cromwell-workdir/cromwell-executions/pecgs_TN_wxs_bam.cwl/937bd723-92ae-43ef-b278-b550d17424bb/call-run_neoscan/execution/output/sample/sample.neo.snv.summary 252732 eba32998-2438-4b28-aa7a-b5a1938b153a C3L-00677_9d492e62-5b46-4b9a-a4af-cd40c74548b9 9d492e62-5b46-4b9a-a4af-cd40c74548b9 2022-10-26