diff --git a/paper/paper.bib b/paper/paper.bib index 5a3ffec5..5bd6f347 100644 --- a/paper/paper.bib +++ b/paper/paper.bib @@ -108,4 +108,75 @@ @inproceedings{pandas pages={51--56}, year={2010}, organization={Austin, TX} +} + +@ARTICLE{des3yr, + author = {{Abbott}, T.~M.~C. and {Allam}, S. and {Andersen}, P. and {Angus}, C. and + {Asorey}, J. and {Avelino}, A. and {Avila}, S. and {Bassett}, B.~A. and + {Bechtol}, K. and {Bernstein}, G.~M. and {Bertin}, E. and {Brooks}, D. and + {Brout}, D. and {Brown}, P. and {Burke}, D.~L. and {Calcino}, J. and + {Carnero Rosell}, A. and {Carollo}, D. and {Carrasco Kind}, M. and + {Carretero}, J. and {Casas}, R. and {Castander}, F.~J. and + {Cawthon}, R. and {Challis}, P. and {Childress}, M. and + {Clocchiatti}, A. and {Cunha}, C.~E. and {D'Andrea}, C.~B. and + {da Costa}, L.~N. and {Davis}, C. and {Davis}, T.~M. and + {De Vicente}, J. and {DePoy}, D.~L. and {Desai}, S. and {Diehl}, H.~T. and + {Doel}, P. and {Drlica-Wagner}, A. and {Eifler}, T.~F. and + {Evrard}, A.~E. and {Fernandez}, E. and {Filippenko}, A.~V. and + {Finley}, D.~A. and {Flaugher}, B. and {Foley}, R.~J. and + {Fosalba}, P. and {Frieman}, J. and {Galbany}, L. and + {Garc{\'\i}a-Bellido}, J. and {Gaztanaga}, E. and {Giannantonio}, T. and + {Glazebrook}, K. and {Goldstein}, D.~A. and + {Gonz{\'a}lez-Gait{\'a}n}, S. and {Gruen}, D. and {Gruendl}, R.~A. and + {Gschwend}, J. and {Gupta}, R.~R. and {Gutierrez}, G. and + {Hartley}, W.~G. and {Hinton}, S.~R. and {Hollowood}, D.~L. and + {Honscheid}, K. and {Hoormann}, J.~K. and {Hoyle}, B. and + {James}, D.~J. and {Jeltema}, T. and {Johnson}, M.~W.~G. and + {Johnson}, M.~D. and {Kasai}, E. and {Kent}, S. and {Kessler}, R. and + {Kim}, A.~G. and {Kirshner}, R.~P. and {Kovacs}, E. and {Krause}, E. and + {Kron}, R. and {Kuehn}, K. and {Kuhlmann}, S. and {Kuropatkin}, N. and + {Lahav}, O. and {Lasker}, J. and {Lewis}, G.~F. and {Li}, T.~S. and + {Lidman}, C. and {Lima}, M. and {Lin}, H. and {Macaulay}, E. and + {Maia}, M.~A.~G. and {Mandel}, K.~S. and {March}, M. and + {Marriner}, J. and {Marshall}, J.~L. and {Martini}, P. and + {Menanteau}, F. and {Miller}, C.~J. and {Miquel}, R. and {Miranda}, V. and + {Mohr}, J.~J. and {Morganson}, E. and {Muthukrishna}, D. and + {M{\"o}ller}, A. and {Neilsen}, E. and {Nichol}, R.~C. and {Nord}, B. and + {Nugent}, P. and {Ogando}, R.~L.~C. and {Palmese}, A. and + {Pan}, Y. -C. and {Plazas}, A.~A. and {Pursiainen}, M. and + {Romer}, A.~K. and {Roodman}, A. and {Rozo}, E. and {Rykoff}, E.~S. and + {Sako}, M. and {Sanchez}, E. and {Scarpine}, V. and {Schindler}, R. and + {Schubnell}, M. and {Scolnic}, D. and {Serrano}, S. and + {Sevilla-Noarbe}, I. and {Sharp}, R. and {Smith}, M. and + {Soares-Santos}, M. and {Sobreira}, F. and {Sommer}, N.~E. and + {Spinka}, H. and {Suchyta}, E. and {Sullivan}, M. and {Swann}, E. and + {Tarle}, G. and {Thomas}, D. and {Thomas}, R.~C. and {Troxel}, M.~A. and + {Tucker}, B.~E. and {Uddin}, S.~A. and {Walker}, A.~R. and + {Wester}, W. and {Wiseman}, P. and {Wolf}, R.~C. and {Yanny}, B. and + {Zhang}, B. and {Zhang}, Y. and {DES Collaboration}}, + title = "{First Cosmology Results using Type Ia Supernovae from the Dark Energy Survey: Constraints on Cosmological Parameters}", + journal = {\apjl}, + keywords = {dark energy, dark matter, Astrophysics - Cosmology and Nongalactic Astrophysics}, + year = "2019", + month = "Feb", + volume = {872}, + number = {2}, + eid = {L30}, + pages = {L30}, + doi = {10.3847/2041-8213/ab04fa}, +archivePrefix = {arXiv}, + eprint = {1811.02374}, + primaryClass = {astro-ph.CO}, + adsurl = {https://ui.adsabs.harvard.edu/abs/2019ApJ...872L..30A}, + adsnote = {Provided by the SAO/NASA Astrophysics Data System} +} + +@article{sklearn, + title={Scikit-learn: Machine learning in Python}, + author={Pedregosa, Fabian and Varoquaux, Ga{\"e}l and Gramfort, Alexandre and Michel, Vincent and Thirion, Bertrand and Grisel, Olivier and Blondel, Mathieu and Prettenhofer, Peter and Weiss, Ron and Dubourg, Vincent and others}, + journal={Journal of machine learning research}, + volume={12}, + number={Oct}, + pages={2825--2830}, + year={2011} } \ No newline at end of file diff --git a/paper/paper.md b/paper/paper.md index 4abbaa99..0d074e23 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -20,7 +20,11 @@ bibliography: paper.bib Pippin is a python pipeline for supernova cosmology analysis. It is designed to allow a user to specify a cosmological analysis via a configuration file, and then -run that analysis, start to finish, in a single execution. +run that analysis, start to finish, in a single execution. Whilst other tools exist to perform +various aspects of supernova cosmology analyses independently, connecting the required tasks has so far been +a manual process. For the DES-3YR analysis [@des3yr], we implemented a basic bash pipeline to reduce +manual labour. For the DES-5YR analysis, which greatly increases complexity, I implement this pipeline to increase +researcher productivity. To this end, Pippin interfaces with multiple external programs in the execution of its derived tasks. @@ -30,7 +34,8 @@ computing the required bias corrections and feeding the results into CosmoMC [@cosmomc]. The MCMC outputs are then analysed in ChainConsumer [@ChainConsumer]. Additonal plots are performed via the matplotlib library [@matplotlib], and -makes use of various numpy [@numpy], scipy [@scipy] and pandas [@pandas] functions. +makes use of various numpy [@numpy], scipy [@scipy] and pandas [@pandas] functions. Several +machine learning functions make use of scikit-learn [@sklearn]. Any bugs or feature requests can be opened as issues on the Github development page [@github].