moseq2-model installation fails

[zaloch]

Hi! I am trying to install moseq2-model but I am having difficulties.
Since pip >19.0 breaks the installation of moseq2-model I am using pip 18.1.
I am using moseq2 installation with Conda + Python 3.6 on Windows 10.

When I run 'pip install git+https://github.com/dattalab/moseq2-model.git --process-dependency-links'

I get:

error.txt

*I included this as a txt file as the error message is quite long to include as a screenshot.

All the other commands for the other components of moseq install and work fine. I am stuck at the model step as it is not recognized as a command as it fails to compile with the above link. Something is going wrong when building wheel for autoregressive.

Any help would be greatly appreciated.

Thank you!

[jmarkow]

So I don't have a Windows machine to test this on myself, and I haven't installed moseq2-model on a Windows machine. My guess is you'll need to use something like this,

https://github.com/GeoscienceAustralia/tcrm/wiki/Compiling-the-C-extensions-in-MinGW-on-Windows-platforms-with-Anaconda

and adapt for the appropriate python version (3.6). If I can get my hands on a machine running Windows 10 I'll see if I can work out the right steps.

[jmarkow]

This looks relevant,

https://stackoverflow.com/questions/52864588/how-to-install-cython-an-anaconda-64-bits-with-windows-10

[jmarkow]

OK, just got my hands on a Windows 10 laptop. This looks like a good option,

https://www.microsoft.com/en-us/p/debian/9msvkqc78pk6?activetab=pivot:overviewtab

I'll detail the steps here when I have them worked out.

[jmarkow]

OK, once you have the WSL Debian app installed, open up the app, which should drop you in a bash terminal. Then, run,

sudo apt-get install build-essential curl libxrender-dev libsm6 libglib2.0-0

You should be able to follow the Linux installation instructions after that. Note that I had to upgrade numpy for everything to work,

pip install --upgrade pip
pip install git+https://github.com/dattalab/moseq2-extract.git
pip install git+https://github.com/dattalab/moseq2-pca.git
pip install git+https://github.com/dattalab/moseq2-model.git 
pip install git+https://github.com/dattalab/moseq2-batch.git
pip install git+https://github.com/dattalab/moseq2-viz.git
pip install --upgrade numpy

[zaloch]

Thank you! this worked perfectly.

*I didn't have access to the windows store. But, I was able to install Debian with these instructions:

https://docs.microsoft.com/en-us/windows/wsl/install-on-server