README.Rmd

---
output: 
  github_document:
    html_preview: false
---

# viash tutorial - part 1

Part 1 of this tutorial illustrate how [viash] works and how it fits into the workflow of a broad audience. 

Contents:

```{r vignettes, results='asis', echo=FALSE}
readmes <- list.files(".", pattern = "README.Rmd", recursive = TRUE)
readmes <- readmes[grepl("^[^/]*/[^/]*$", readmes)] # filter out only direct readmes
for (readme in readmes) {
  lines <- readr::read_lines(readme)
  title1 <- lines[grepl("^title:", lines)][[1]]
  title <- gsub("^.*\"(.*)\"", "\\1", title1)
  html <- gsub("Rmd$", "html", readme)
  pdf <- gsub("Rmd$", "pdf", readme)
  
  folder <- gsub("/.*", "", readme)
  cat("* [", title, "](", folder, ") ([html](", html, "), [pdf](", pdf, "))\n", sep = "")
}
```

In part 2 we start from the above and run the pipeline in NextFlow, and on Kubernetes.

----

![Creative Commons Attribution 4.0 International License](https://github.com/creativecommons/cc-cert-core/blob/master/images/cc-by-88x31.png "CC BY")
Licensed under a [Creative Commons Attribution 4.0 International License (CC BY)](https://creativecommons.org/licenses/by/4.0/).

Except where otherwise noted, this content is published under a [CC BY license](https://creativecommons.org/licenses/by/4.0/), which means that you can copy, redistribute, remix, transform and build upon the content for any purpose even commercially as long as you give appropriate credit and provide a link to the license.

Recommended attribution: 

> "viash tutorial part 1" by Data Intuitive is licensed under CC BY 4.0. Available at    
> https://github.com/data-intuitive/viash_workshop_1/blob/main/LICENSE.md



[viash]: https://github.com/data-intuitive/viash