Dockerfile

FROM samos123/drupal
MAINTAINER Nasser Alansari <alansari.n@nyu.edu>

# Install packages
RUN apt-get -q update && \
    DEBIAN_FRONTEND=noninteractive apt-get -yq --no-install-recommends install \
        wget patch git \
        cron \
        logrotate

# Add logrotate conf
ADD logrotate.d/tripal /etc/logrotate.d/

# Compile a php7 compatible version of uploadprogress modules
WORKDIR /tmp
RUN git clone https://github.com/php/pecl-php-uploadprogress.git \
    && cd pecl-php-uploadprogress && phpize \
    && ./configure \
    && make \
    && make install


#==== Tripal installation  ====================================================
WORKDIR /var/www/html/sites/all/modules
ENV TRIPAL_VERSION="tripal-7.x-2.x-"
ENV CHADO_INSTALL_OPTION="Install Chado v1.3"

# Download modules
RUN drush pm-download ctools views ${TRIPAL_VERSION}

# Applying patch: A bug exists in Drupal related to the bytea data type in PostgreSQL
WORKDIR /var/www/html
RUN wget --no-check-certificate https://drupal.org/files/drupal.pgsql-bytea.27.patch && patch -p1 < drupal.pgsql-bytea.27.patch

# Applying patch: a bug in the Drupal Views 3.0 code that prevents Tripal's administrative and search data views from functioning
WORKDIR /var/www/html/sites/all/modules/views
RUN patch -p1 < ../tripal/tripal_views/views-sql-compliant-three-tier-naming-1971160-22.patch

ADD scripts/ /scripts

ENV TRIPAL_GIT_CLONE_MODULES=""
ENV TRIPAL_DOWNLOAD_MODULES=""
ENV TRIPAL_ENABLE_MODULES="tripal_genetic tripal_natural_diversity tripal_phenotype tripal_project tripal_pub tripal_stock"

# Add PHP-settings
ADD php-conf.d/ $PHP_INI_DIR/conf.d/


# SSH
RUN apt-get install -y openssh-server
RUN mkdir /var/run/sshd
RUN echo 'root:changeme' | chpasswd
RUN sed -i 's/PermitRootLogin without-password/PermitRootLogin yes/' /etc/ssh/sshd_config
RUN sed 's@session\s*required\s*pam_loginuid.so@session optional pam_loginuid.so@g' -i /etc/pam.d/sshd

ENV NOTVISIBLE "in users profile"
RUN echo "export VISIBLE=now" >> /etc/profile

EXPOSE 22