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Now processing... batch: 2023_05_04_Pilot
Now annotating... plate: CPmGluePilotU2OS
Traceback (most recent call last):
File "profiling-recipe/profiles/profiling_pipeline.py", line 34, in <module>
run_pipeline.pipeline_annotate(batch=batch, plate=plate)
File "/home/ubuntu/work/projects/2023_05_04_mGlueCP_AD/workspace/software/2023_05_04_mGlueCP_AD/profiling-recipe/profiles/profile.py", line 160, in pipeline_annotate
annotate(
File "/home/ubuntu/ebs_tmp/2023_05_04_mGlueCP_AD/workspace/software/pycytominer/pycytominer/annotate.py", line 77, in annotate
profiles = load_profiles(profiles)
File "/home/ubuntu/ebs_tmp/2023_05_04_mGlueCP_AD/workspace/software/pycytominer/pycytominer/cyto_utils/load.py", line 94, in load_profiles
if is_path_a_parquet_file(profiles):
File "/home/ubuntu/ebs_tmp/2023_05_04_mGlueCP_AD/workspace/software/pycytominer/pycytominer/cyto_utils/load.py", line 35, in is_path_a_parquet_file
raise TypeError(f"file must be a str or pathlib.Path not {type(file)}")
TypeError: file must be a str or pathlib.Path not <class 'pathlib.PurePosixPath'>
If I jump back to 5c15711 then it works fine. Didn't dig deeper than that.
The text was updated successfully, but these errors were encountered:
If I jump back to 5c15711 then it works fine. Didn't dig deeper than that.
The text was updated successfully, but these errors were encountered: