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DEmethod_characteristics.txt
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DEmethod_characteristics.txt
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method input modeling transformation NAresults availabilityedgeRLRT counts parametric no no BioconductoredgeRLRTdeconv counts parametric no no BioconductoredgeRLRTcensus Census parametric no no BioconductoredgeRQLF counts parametric no no BioconductoredgeRQLFDetRate counts parametric no no BioconductoredgeRLRTrobust counts parametric no no BioconductorROTSvoom CPM nonparametric log no BioconductorROTScpm CPM nonparametric no no BioconductorROTStpm TPM nonparametric no no BioconductorDESeq2 counts parametric no yes BioconductorDESeq2nofilt counts parametric no no BioconductorDESeq2census Census parametric no yes BioconductorMASTtpm TPM parametric log no BioconductorMASTcpm CPM parametric log no BioconductorMASTtpmDetRate TPM parametric log no BioconductorMASTcpmDetRate CPM parametric log no Bioconductormonocle TPM parametric log no Bioconductormonoclecount counts parametric no no Bioconductormonoclecensus Census parametric no no BioconductorSeuratBimod counts parametric log yes GitHubSeuratBimodnofilt counts parametric log no GitHubSeuratTobit TPM parametric log yes GitHubSeuratBimodIsExpr2 counts parametric log yes GitHubSAMseq counts nonparametric no yes CRANWilcoxon TPM nonparametric no no RNODES counts nonparametric no yes AuthorLinkSCDE counts parametric no no BioconductorBPSC CPM parametric no yes GitHubD3E counts nonparametric no yes GitHubvoomlimma CPM parametric log no Bioconductorlimmatrend CPM parametric log no BioconductormetagenomeSeq counts parametric log yes Bioconductorttest TPM parametric log no RscDD counts nonparametric log yes BioconductorDEsingle counts parametric no no GitHub
DESeq2betapFALSE counts parametric no yes Bioconductor
zinbwaveedgeR counts parametric no no GitHub
zinbwaveDESeq2 counts parametric no yes GitHub
DESeq2LRT counts parametric no yes Bioconductor
logregLRT CPM parametric log no R