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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("baseEditorName<-")
export("editingStrand<-")
export("editingWeights<-")
export("metadata<-")
export("nickaseName<-")
export("nickingStrand<-")
export("nucleaseName<-")
export("pamSide<-")
export("spacerGap<-")
export("spacerLength<-")
export("targetType<-")
export("weights<-")
export(BaseEditor)
export(CrisprNickase)
export(CrisprNuclease)
export(Nickase)
export(Nuclease)
export(annotateMismatches)
export(baseEditorName)
export(cutSites)
export(editingStrand)
export(editingWeights)
export(extractPamFromTarget)
export(extractProtospacerFromTarget)
export(getAvailableCrisprNucleases)
export(getCutSiteFromPamSite)
export(getCutSiteRanges)
export(getEditingSiteFromPamSite)
export(getPamRanges)
export(getProtospacerRanges)
export(getTargetRanges)
export(hasSpacerGap)
export(isCutting)
export(isDnase)
export(isRnase)
export(metadata)
export(motifLength)
export(motifs)
export(nickaseName)
export(nickingStrand)
export(nucleaseName)
export(pamIndices)
export(pamLength)
export(pamSide)
export(pams)
export(plotEditingWeights)
export(prototypeSequence)
export(spacerGap)
export(spacerIndices)
export(spacerLength)
export(targetLength)
export(targetType)
export(weights)
exportClasses(BaseEditor)
exportClasses(CrisprNickase)
exportClasses(CrisprNuclease)
exportClasses(Nickase)
exportClasses(Nuclease)
exportMethods("baseEditorName<-")
exportMethods("editingStrand<-")
exportMethods("editingWeights<-")
exportMethods("nickaseName<-")
exportMethods("nickingStrand<-")
exportMethods("nucleaseName<-")
exportMethods("pamSide<-")
exportMethods("spacerGap<-")
exportMethods("spacerLength<-")
exportMethods("targetType<-")
exportMethods("weights<-")
exportMethods(baseEditorName)
exportMethods(cutSites)
exportMethods(editingStrand)
exportMethods(editingWeights)
exportMethods(hasSpacerGap)
exportMethods(isCutting)
exportMethods(isDnase)
exportMethods(isRnase)
exportMethods(motifLength)
exportMethods(motifs)
exportMethods(nickaseName)
exportMethods(nickingStrand)
exportMethods(nucleaseName)
exportMethods(pamIndices)
exportMethods(pamLength)
exportMethods(pamSide)
exportMethods(pams)
exportMethods(prototypeSequence)
exportMethods(show)
exportMethods(spacerGap)
exportMethods(spacerIndices)
exportMethods(spacerLength)
exportMethods(targetLength)
exportMethods(targetType)
exportMethods(weights)
import(methods)
importClassesFrom(S4Vectors,Annotated)
importFrom(BiocGenerics,"end<-")
importFrom(BiocGenerics,"start<-")
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(BiocGenerics,width)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,reverseComplement)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(methods,validObject)
importFrom(stringr,str_match)
importFrom(utils,data)