Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bump version of actions #20

Merged
merged 1 commit into from
Feb 6, 2023
Merged

Bump version of actions #20

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 6 additions & 6 deletions .github/workflows/automate_CovidMetrics-epiBATS.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,18 +10,18 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- name: Install system dependencies
run: sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libv8-dev libicu-dev

- uses: r-lib/actions/setup-renv@v1
- uses: r-lib/actions/setup-renv@v2

- name: Generate forecasts
working-directory: models/${{ github.workflow }}
Expand All @@ -30,7 +30,7 @@ jobs:
source("main.R")
shell: Rscript {0}

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -41,12 +41,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
8 changes: 4 additions & 4 deletions .github/workflows/automate_ULZF.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

Expand All @@ -19,7 +19,7 @@ jobs:
run: |
bash main.sh

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -30,12 +30,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
8 changes: 4 additions & 4 deletions .github/workflows/automate_UpgUmibUsi.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

Expand All @@ -19,7 +19,7 @@ jobs:
run: |
bash main.sh

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -30,12 +30,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
12 changes: 6 additions & 6 deletions .github/workflows/automate_baseline.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,15 +10,15 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-renv@v1
- uses: r-lib/actions/setup-renv@v2

- name: Generate forecasts
working-directory: models/${{ github.workflow }}
Expand All @@ -27,7 +27,7 @@ jobs:
source("main.R")
shell: Rscript {0}

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -38,12 +38,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
12 changes: 6 additions & 6 deletions .github/workflows/automate_epiforecasts-admissions.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,18 +10,18 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- name: Install system dependencies
run: sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libv8-dev

- uses: r-lib/actions/setup-renv@v1
- uses: r-lib/actions/setup-renv@v2

- name: Generate forecasts
working-directory: models/${{ github.workflow }}
Expand All @@ -30,7 +30,7 @@ jobs:
source("main.R")
shell: Rscript {0}

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -40,12 +40,12 @@ jobs:
needs: generate-forecasts
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
8 changes: 4 additions & 4 deletions .github/workflows/automate_epinow2.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

Expand All @@ -19,7 +19,7 @@ jobs:
run: |
bash main.sh

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -30,12 +30,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
12 changes: 6 additions & 6 deletions .github/workflows/automate_weekly-growth.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,18 +10,18 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: true

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- name: Install system dependencies
run: sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libv8-dev

- uses: r-lib/actions/setup-renv@v1
- uses: r-lib/actions/setup-renv@v2

- name: Generate forecasts
working-directory: models/${{ github.workflow }}
Expand All @@ -31,7 +31,7 @@ jobs:
source("main.R")
shell: Rscript {0}

- uses: actions/upload-artifact@v2
- uses: actions/upload-artifact@v3
with:
name: ${{ github.workflow }}
retention-days: 5
Expand All @@ -42,12 +42,12 @@ jobs:
runs-on: ubuntu-20.04

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
repository: 'covid19-forecast-hub-europe/covid19-forecast-hub-europe'
token: ${{ secrets.FORECASTHUB_TOKEN }}

- uses: actions/download-artifact@v2
- uses: actions/download-artifact@v3
with:
name: ${{ github.workflow }}
path: data-processed
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/render-readme.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Checkout repos
uses: actions/checkout@v2
uses: actions/checkout@v3

- name: Setup R
uses: r-lib/actions/setup-r@v2
Expand Down