From e56d05f9cc4f0021621f791b74ab487322443911 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 5 May 2023 22:25:15 +0200 Subject: [PATCH] Designated lineage FE.1.1 (ORF8:S67F) with 100 designations --- lineage_notes.txt | 1 + lineages.csv | 114 +++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 114 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index c492826a..44aa1442 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2726,6 +2726,7 @@ XBB.1.17.2 Defined by ORF1a:A698S, Russia, from issue #1712 XBB.1.18 Defined by A8001G, Brazil XBB.1.18.1 Defined by S:F486P, Brazil FE.1 Alias of XBB.1.18.1.1, S:F456L, Brazil/Chile +FE.1.1 Alias of XBB.1.18.1.1.1, ORF8:S67F, T4579A XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680 XBB.1.19.1 Defined by S:E554K XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia diff --git a/lineages.csv b/lineages.csv index 3d83ad4a..eb10dfb6 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2351284,7 +2351284,6 @@ Brazil/SP-IB_CEVC_2206055/2023,FE.1 Canada/ON-KHS-23-02899-v1/2023,FE.1 Chile/RM-15124/2023,FE.1 Japan/IC-16335/2023,FE.1 -USA/FL-CDC-QDX47043293/2023,FE.1 Brazil/SP-IB_CEVC_2206051/2023,FE.1 Brazil/SP-IB_CEVC_2206041/2023,FE.1 Chile/RM-15678/2023,FE.1 @@ -2382613,3 +2382612,116 @@ Spain/CT-HUGTiP-F1R035/2023,XBB.1.5.57 Spain/CT-HUGTiP-C2R135/2023,XBB.1.5.57 Spain/CT-HUGTiP-D1R135/2023,XBB.1.5.57 Spain/CT-HUGTiP-B8R133/2023,XBB.1.5.57 +USA/FL-CDC-QDX47043293/2023,FE.1.1 +Canada/NS-NSH-613256/2023,FE.1.1 +Canada/NS-NSH-617507/2023,FE.1.1 +Israel/ICH-741197040/2023,FE.1.1 +Brazil/BA-LACEN-BA3670-292954602/2023,FE.1.1 +USA/FL-CDC-QDX48956834/2023,FE.1.1 +USA/FL-CDC-QDX48956789/2023,FE.1.1 +USA/WI-CDC-QDX49007165/2023,FE.1.1 +USA/FL-CDC-QDX48733909/2023,FE.1.1 +USA/FL-CDC-QDX48734057/2023,FE.1.1 +Canada/ON-PHL-23-21236-v2/2023,FE.1.1 +USA/IL-CDC-QDX49007143/2023,FE.1.1 +USA/FL-CDC-QDX48853910/2023,FE.1.1 +Ireland/WX-NVRL-SIRL00017537/2023,FE.1.1 +Ireland/CO-CUH-S23C0201/2023,FE.1.1 +Ireland/CO-CUH-S23C0205/2023,FE.1.1 +USA/FL-CDC-QDX48854104/2023,FE.1.1 +Canada/ON-PHL-23-21424/2023,FE.1.1 +Canada/ON-PHL-23-21235-v2/2023,FE.1.1 +Canada/ON-PHL-23-21295-v2/2023,FE.1.1 +Denmark/DCGC-646174/2023,FE.1.1 +Canada/ON-PHL-23-21943/2023,FE.1.1 +Canada/ON-PHL-23-21905/2023,FE.1.1 +Canada/ON-PHL-23-21278-v2/2023,FE.1.1 +Canada/ON-PHL-23-21232-v2/2023,FE.1.1 +Canada/ON-PHL-23-21233-v2/2023,FE.1.1 +Canada/ON-PHL-23-21234-v2/2023,FE.1.1 +Canada/ON-PHL-23-21274-v2/2023,FE.1.1 +Austria/AGES-1135119/2023,FE.1.1 +USA/FL-CDC-VSX-A063864/2023,FE.1.1 +Canada/QC-L00604347001/2023,FE.1.1 +Canada/QC-L00604360001/2023,FE.1.1 +Canada/QC-L00604319001/2023,FE.1.1 +Canada/QC-L00604515001/2023,FE.1.1 +Canada/QC-L00604624001/2023,FE.1.1 +Canada/QC-L00604839001/2023,FE.1.1 +Canada/QC-L00605905001/2023,FE.1.1 +Japan/PG-471046/2023,FE.1.1 +USA/IL-4222023055/2023,FE.1.1 +South Korea/KDCA231041/2023,FE.1.1 +Italy/VEN-ULSS3GEN-7002561523_VE/2023,FE.1.1 +Italy/VEN-ULSS3GEN-7002565337_VE/2023,FE.1.1 +France/NAQ-HCL723000610701/2023,FE.1.1 +South Korea/KDCA229842/2023,FE.1.1 +USA/NJ-PHEL-V23009140/2023,FE.1.1 +USA/TX-CDC-QDX49328225/2023,FE.1.1 +USA/TX-CDC-QDX49225964/2023,FE.1.1 +Canada/NS-NSH-620009/2023,FE.1.1 +Brazil/SC-FIOCRUZ-2167/2023,FE.1.1 +France/ARA-CHUCF-233001365401/2023,FE.1.1 +USA/VA-VTVAS3-GSC42703/2023,FE.1.1 +USA/CA-CDC-QDX49225968/2023,FE.1.1 +USA/AZ-ASU101636/2023,FE.1.1 +USA/FL-CDC-QDX49125698/2023,FE.1.1 +USA/FL-CDC-QDX49226269/2023,FE.1.1 +Portugal/PT47494/2023,FE.1.1 +Canada/ON-PHL-23-22168/2023,FE.1.1 +Canada/ON-PHL-23-22167/2023,FE.1.1 +Canada/ON-PHL-23-22842/2023,FE.1.1 +USA/FL-CDC-QDX49125704/2023,FE.1.1 +USA/FL-CDC-QDX49125729/2023,FE.1.1 +Canada/QC-L00596142001/2023,FE.1.1 +Canada/QC-L00596331001/2023,FE.1.1 +USA/NJ-CDC-QDX48043347/2023,FE.1.1 +USA/NJ-CDC-QDX47973737/2023,FE.1.1 +Israel/ICH-741197031/2023,FE.1.1 +USA/NY-CDC-QDX48094663/2023,FE.1.1 +Canada/ON-PHL-23-19603/2023,FE.1.1 +Italy/PAB_SABES_7850021107/2023,FE.1.1 +USA/NJ-GBW-H20-314-1228/2023,FE.1.1 +Belgium/rega-47112/2023,FE.1.1 +France/OCC-HCL723000460501/2023,FE.1.1 +USA/MN-CDC-QDX48043901/2023,FE.1.1 +USA/MI-CDC-QDX48415431/2023,FE.1.1 +Canada/QC-L00599736001/2023,FE.1.1 +USA/VA-CDC-LC1034213/2023,FE.1.1 +France/BFC-IPP08373/2023,FE.1.1 +Denmark/DCGC-645713/2023,FE.1.1 +USA/VA-GBW-H20-279-4238/2023,FE.1.1 +USA/CA-GBW-H10-010-5244/2023,FE.1.1 +Portugal/PT47265/2023,FE.1.1 +USA/NY-CDC-QDX48685247/2023,FE.1.1 +Switzerland/VD-CHUV-GEN16473/2023,FE.1.1 +Anhui/XCCDC-069/2023,FE.1.1 +South Korea/KDCA229571/2023,FE.1.1 +Anhui/XCCDC-076/2023,FE.1.1 +Canada/QC-L00604436001/2023,FE.1.1 +USA/KS-KHEL-13367/2023,FE.1.1 +Portugal/PT47194/2023,FE.1.1 +USA/MI-CDC-QDX48551749/2023,FE.1.1 +South Korea/KDCA226774/2023,FE.1.1 +Brazil/SP-FIOCRUZ-1658/2023,FE.1.1 +Brazil/SP-FIOCRUZ-1651/2023,FE.1.1 +Brazil/SC-FIOCRUZ-1754/2023,FE.1.1 +USA/FL-CDC-LC1034627/2023,FE.1.1 +USA/NJ-CDC-LC1034723/2023,FE.1.1 +Spain/CT-LabRefCat-2346315/2023,FE.1.1 +USA/NY-NYULH-P23-14126/2023,FE.1.1 +USA/NY-CDC-QDX48316232/2023,FE.1.1 +USA/NY-CDC-QDX48365416/2023,FE.1.1 +USA/NJ-CDC-QDX48316185/2023,FE.1.1 +USA/NJ-GBW-H10-012-2488/2023,FE.1.1 +Belgium/rega-47172/2023,FE.1.1 +Belgium/rega-47120/2023,FE.1.1 +Canada/BC-BCCDC-611116/2023,FE.1.1 +Australia/VIC82460/2023,FE.1.1 +Brazil/SP-IB_CEVC_2206278/2023,FE.1.1 +Brazil/SP-IB_CEVC_2206264/2023,FE.1.1 +USA/CA-CDC-QDX47595045/2023,FE.1.1 +Belgium/rega-47028/2023,FE.1.1 +Belgium/rega-47048/2023,FE.1.1 +USA/FL-CDC-QDX47771693/2023,FE.1.1 +USA/NC-MCPH-CLT-014384/2023,FE.1.1