From d0f51a19619ca8515c347deb876a3e5f55c62173 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 22 Apr 2023 22:49:39 +0200 Subject: [PATCH] Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations --- lineage_notes.txt | 1 + lineages.csv | 86 ++++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 83 insertions(+), 4 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 1b7f7913..44c121dc 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2687,6 +2687,7 @@ XBB.1.15 Defined by ORF1a:A540V on ORF8:G8* polytomy, found in USA, Guatemala, a XBB.1.16 Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, from pango-designation issue #1723 XBB.1.16.1 Defined by S:T547I FU.1 Alias of XBB.1.16.1.1, T3802C +FU.2 Alias of XBB.1.16.1.2, C8692T XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India XBB.1.16.3 Defined by A2893C, India XBB.1.17 Defined by T27995C and ORF1a:L469F, from issue #1712 diff --git a/lineages.csv b/lineages.csv index a381660f..bb19acc7 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2349215,10 +2349215,6 @@ Germany/BW-RKI-I-1115583/2023,XBB.1.16.1 Wales/PHWC-PKPG7B/2023,XBB.1.16.1 Wales/PHWC-PKP8ZC/2023,XBB.1.16.1 Wales/PHWC-PKPDPF/2023,XBB.1.16.1 -England/QEUH-326F76ED/2023,XBB.1.16.1 -England/QEUH-326F4BC3/2023,XBB.1.16.1 -Japan/PG-463075/2023,XBB.1.16.1 -India/GJ-GBRC10280/2023,XBB.1.16.1 India/KA-SLS-SEQ-54017/2023,XBB.1.16.1 India/KL-1081-TSR-12360/2023,XBB.1.16.1 India/MH-NIV-13094/2023,XBB.1.16.1 @@ -2371038,3 +2371034,85 @@ Scotland/SCOT-29102/2023,FU.1 India/MH-RFIP17830/2023,FU.1 India/MH-RFIP17826/2023,FU.1 India/MH-ICMR-NIV-G-13340/2023,FU.1 +India/TG-CDFD-MMG-588/2023,FU.2 +England/PHEC-YYETNBT/2023,FU.2 +India/PY-20847_S1_R1_001/2023,FU.2 +England/QEUH-326F4BC3/2023,FU.2 +Canada/ON-PHL-19851/2023,FU.2 +USA/CA-Stanford-139_S39/2023,FU.2 +Singapore/R21MR324/2023,FU.2 +England/BRBR-3270AA08/2023,FU.2 +England/BRBR-3270A18B/2023,FU.2 +England/BRBR-3270AB05/2023,FU.2 +England/BRBR-3270AA53/2023,FU.2 +England/QEUH-326F76ED/2023,FU.2 +India/GJ-GBRC10280/2023,FU.2 +England/BRBR-3270A992/2023,FU.2 +England/BRBR-3270ABAB/2023,FU.2 +England/BRBR-3270AB32/2023,FU.2 +Australia/NSW-ICPMR-44982/2023,FU.2 +Australia/NSW-ICPMR-44785/2023,FU.2 +Shanghai/SCDC-SH-HG0411-201/2023,FU.2 +CHN/SH-HG20230411-201/2023,FU.2 +USA/CA-CDC-QDX48366074/2023,FU.2 +USA/CA-CDC-QDX48366073/2023,FU.2 +USA/TX-HMH-MCoV-127955/2023,FU.2 +USA/TX-CDC-QDX48496835/2023,FU.2 +Singapore/R21MR442/2023,FU.2 +Singapore/R21MR332/2023,FU.2 +Singapore/R23MR53/2023,FU.2 +Singapore/R23MR57/2023,FU.2 +Singapore/R23MR51/2023,FU.2 +Singapore/R7NP46/2023,FU.2 +Singapore/R7NP41/2023,FU.2 +Singapore/R23MR459/2023,FU.2 +Singapore/R23MR458/2023,FU.2 +Singapore/R23MR56/2023,FU.2 +Singapore/R22MR395/2023,FU.2 +India/PY-20820_S1_R1_001/2023,FU.2 +India/PY-20839_S1_R1_001/2023,FU.2 +India/DL-ILBS-7557/2023,FU.2 +India/DL-ILBS-8610/2023,FU.2 +India/DL-ILBS-7951/2023,FU.2 +India/DL-ILBS-7893/2023,FU.2 +India/DL-ILBS-7894/2023,FU.2 +Singapore/NPHL-R23MR100/2023,FU.2 +India/HR-NII-1651/2023,FU.2 +India/DL-ILBS-7550/2023,FU.2 +India/DL-ILBS-7551/2023,FU.2 +India/DL-ILBS-7590/2023,FU.2 +India/DL-ILBS-7591/2023,FU.2 +Chile/AR-29533/2023,FU.2 +Chile/RM-26604/2023,FU.2 +Chile/MA-28071/2023,FU.2 +USA/NY-PRL-230329_81E05/2023,FU.2 +Chile/RM-24624/2023,FU.2 +India/GJ-GBRC10442/2023,FU.2 +USA/WA-GBW-H20-303-7100/2023,FU.2 +USA/WA-GBW-H10-010-9062/2023,FU.2 +India/GJ-INSACOG-GBRC11514/2023,FU.2 +India/GJ-INSACOG-GBRC11566/2023,FU.2 +India/PY-20827_S1_R1_001/2023,FU.2 +India/PY-20829_S1_R1_001/2023,FU.2 +India/DL-ILBS-8475/2023,FU.2 +Singapore/R21MR447/2023,FU.2 +Singapore/R24MR15/2023,FU.2 +Singapore/R6NP15/2023,FU.2 +Japan/TKYkbm88852/2023,FU.2 +Japan/TKYnat13033/2023,FU.2 +Japan/PG-463075/2023,FU.2 +Japan/TKYnat13079/2023,FU.2 +India/MH-RFIP17794/2023,FU.2 +India/MH_BJCOG_5361/2023,FU.2 +India/MH_BJCOG_5376/2023,FU.2 +India/MH_BJCOG_5365/2023,FU.2 +NewZealand/23XA1933/2023,FU.2 +New_Zealand/23XA1933/2023,FU.2 +Japan/PG-469051/2023,FU.2 +New_Zealand/23ZA1835/2023,FU.2 +NewZealand/23ZA1835/2023,FU.2 +India/GJ-GBRC10916/2023,FU.2 +India/GJ-INSACOG-GBRC10803/2023,FU.2 +India/DL-ILBS-8424/2023,FU.2 +India/DL-AIIMS147956/2023,FU.2 +Singapore/NPHL-R22MR452/2023,FU.2