diff --git a/lineage_notes.txt b/lineage_notes.txt index 77afb636..c6bdfa1e 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -4396,6 +4396,7 @@ XEL Recombinant lineage of KS.1.1.2, JN.1 (breakpoint: 22929-24820), South Korea XEM Recombinant lineage of KS.1, KP.3.3.1 (breakpoint: 22600-23038), from sars-cov-2-variants/lineage-proposals#2105 XEN Recombinant lineage of KP.1.1.6, JN.1.11.1 (breakpoint: 22620-24818), from #2791 XEP Recombinant lineage of KP.3.1.1, NP.2 (breakpoint: 21656-22864), from sars-cov-2-variants/lineage-proposals#2166 +XEQ Recombinant lineage of KS.1.1.2, KP.3 (breakpoint: 22600-23038), from #2817 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index 83b9bc9b..0b7a0b63 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2581691,3 +2581691,72 @@ Canada/BC-BCCDC-747637/2024,XEK.3 Canada/BC-BCCDC-747656/2024,XEK.3 Canada/BC-BCCDC-750587/2024,XEK.3 Canada/BC-BCCDC-747657/2024,XEK.3 +USA/AZ-CDC-LC1122053/2024,XEQ +USA/CO-CDPHE-42307610/2024,XEQ +USA/CO-CDPHE-42323430/2024,XEQ +USA/CO-CDPHE-42322945/2024,XEQ +Canada/AB-ABPHL-125363/2024,XEQ +USA/CO-CDPHE-42384168/2024,XEQ +USA/CO-CDPHE-42410740/2024,XEQ +USA/CO-CDPHE-42452277/2024,XEQ +USA/CO-CDPHE-42452047/2024,XEQ +USA/NV-SNPHL-823888/2024,XEQ +USA/CO-CDPHE-42452141/2024,XEQ +USA/CO-CDPHE-42366999/2024,XEQ +USA/CO-CDPHE-42367179/2024,XEQ +USA/CO-CDPHE-42384652/2024,XEQ +USA/CO-CDPHE-42384235/2024,XEQ +Italy/VEN-ULSS3GEN-7002694420_VE/2024,XEQ +USA/CO-CDPHE-42452016/2024,XEQ +USA/CO-CDPHE-42452323/2024,XEQ +USA/CO-CDPHE-42452269/2024,XEQ +USA/CO-CDPHE-42452079/2024,XEQ +USA/CO-CDPHE-42451992/2024,XEQ +USA/NV-SNPHL-823448/2024,XEQ +USA/CO-CDPHE-42452115/2024,XEQ +USA/CO-CDPHE-42452261/2024,XEQ +USA/UT-UPHL-241206564197/2024,XEQ +USA/CO-CDPHE-42410732/2024,XEQ +USA/CO-CDPHE-42322929/2024,XEQ +USA/CO-CDPHE-42322901/2024,XEQ +USA/CO-CDPHE-42384752/2024,XEQ +USA/CO-CDPHE-42384754/2024,XEQ +USA/CO-CDPHE-42452020/2024,XEQ +USA/CO-CDPHE-42452057/2024,XEQ +USA/CO-CDPHE-42383946/2024,XEQ +USA/PR-CVL-026643/2024,XEQ +USA/PR-CVL-026642/2024,XEQ +USA/PR-CVL-026688/2024,XEQ +USA/CO-CDPHE-42384403/2024,XEQ +USA/CO-CDPHE-42383644/2024,XEQ +USA/CO-CDPHE-42384045/2024,XEQ +USA/TX-HMH-M-146606/2024,XEQ +USA/TX-UHS-UTHSA12149-P1/2024,XEQ +USA/TX-UHS-UTHSA12132-P1/2024,XEQ +USA/CO-CDPHE-42451986/2024,XEQ +USA/CO-CDPHE-42410885/2024,XEQ +USA/CO-CDPHE-42451957/2024,XEQ +USA/CO-CDPHE-42451961/2024,XEQ +USA/CO-CDPHE-42410883/2024,XEQ +USA/NV-SNPHL-825053/2024,XEQ +USA/CO-CDPHE-42383675/2024,XEQ +USA/CO-CDPHE-42451948/2024,XEQ +USA/CO-CDPHE-42452139/2024,XEQ +USA/NV-SNPHL-823891/2024,XEQ +USA/CO-CDPHE-42383921/2024,XEQ +USA/DE-DHSS-550/2024,XEQ +USA/RISHL24COV02075/2024,XEQ +USA/RI-RIDOH-02075/2024,XEQ +USA/RI-RISHL-2402075/2024,XEQ +USA/CT-DPH-1260017001/2024,XEQ +USA/DE-DHSS-541/2024,XEQ +USA/CO-CDPHE-42452018/2024,XEQ +USA/CO-CDPHE-42383709/2024,XEQ +USA/CO-CDPHE-42383841/2024,XEQ +USA/CO-CDPHE-42452041/2024,XEQ +USA/CO-CDPHE-42452065/2024,XEQ +USA/CO-CDPHE-42383843/2024,XEQ +USA/CO-CDPHE-42383703/2024,XEQ +USA/CO-CDPHE-42452121/2024,XEQ +USA/CO-CDPHE-42452123/2024,XEQ +USA/CO-CDPHE-42384437/2024,XEQ diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 640eb33f..58c1bf79 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -435,6 +435,7 @@ "XEL": ["KS.1.1.2", "JN.1"], "XEM": ["KS.1", "KP.3.3.1"], "XEN": ["KP.1.1.6", "JN.1.11.1"], - "XEP": ["KP.3.1.1", "NP.2"] + "XEP": ["KP.3.1.1", "NP.2"], + "XEQ": ["KS.1.1.2", "KP.3"] }